CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EES05438

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46970.1	EES05438	AT5G61380.1	11828029

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d024783_P001	Maize	nucleus	60.03	81.78
HORVU1Hr1G017900.1	Barley	nucleus	38.08	53.14
TraesCS1D01G084200.1	Wheat	nucleus	38.23	52.39
TraesCS1B01G100400.2	Wheat	nucleus	37.94	51.99
TraesCS1A01G083000.1	Wheat	nucleus	37.94	51.48
VIT_07s0005g02510.t01	Wine grape	nucleus	10.76	37.0
KXG32305	Sorghum	nucleus	31.69	36.09
EES11436	Sorghum	nucleus	8.72	31.91
KRH69138	Soybean	cytosol, nucleus, vacuole	7.7	29.44
CDY22636	Canola	nucleus	18.75	26.27
GSMUA_Achr5P18390_001	Banana	nucleus	23.11	26.24
CDY06358	Canola	nucleus	18.6	26.07
Bra020017.1-P	Field mustard	nucleus	18.6	25.91
CDX94963	Canola	nucleus	18.75	25.9
Bra031668.1-P	Field mustard	nucleus	18.46	25.81
CDY64745	Canola	nucleus	18.46	25.3
GSMUA_Achr1P19000_001	Banana	mitochondrion, nucleus	21.8	25.3
OQU75890	Sorghum	nucleus	10.47	24.74
KXG31309	Sorghum	nucleus	10.47	24.66
AT1G09530.3	Thale cress	nucleus	18.31	24.05
AT2G46970.1	Thale cress	nucleus	14.1	23.32
VIT_14s0060g00260.t01	Wine grape	nucleus	23.98	23.27
OQU88421	Sorghum	nucleus	13.81	23.0
AT3G62090.2	Thale cress	nucleus	12.06	22.86
CDX80064	Canola	nucleus	13.08	22.5
Bra004489.1-P	Field mustard	nucleus	13.08	22.5
CDX67873	Canola	nucleus	10.03	22.48
Bra003483.1-P	Field mustard	nucleus	10.03	22.48
KRG96663	Soybean	nucleus	20.35	22.12
KRH33663	Soybean	nucleus	14.39	22.05
CDY66254	Canola	nucleus	12.79	22.0
KRH33733	Soybean	nucleus	21.95	21.85
PGSC0003DMT400047079	Potato	nucleus	22.38	21.75
CDY65446	Canola	nucleus	10.32	21.45
KRG90443	Soybean	nucleus	22.38	21.33
Solyc01g102300.2.1	Tomato	nucleus	21.95	21.12
KRH68390	Soybean	nucleus	19.04	20.99
OQU91282	Sorghum	nucleus	16.13	20.56
KRH68348	Soybean	nucleus	15.26	20.31
CDX83349	Canola	nucleus	11.77	20.05
Bra000436.1-P	Field mustard	nucleus	11.77	20.05
CDY50911	Canola	nucleus	7.85	19.93
KXG23955	Sorghum	nucleus	13.52	19.58
KRG96615	Soybean	nucleus	14.68	19.5
CDY11401	Canola	extracellular	9.88	19.32
CDX76616	Canola	extracellular	10.03	19.27
OQU88567	Sorghum	nucleus	7.7	19.13
EES05953	Sorghum	nucleus	10.9	19.08
KXG37359	Sorghum	nucleus	7.41	17.96
Bra007660.1-P	Field mustard	nucleus	10.61	17.3
EER89334	Sorghum	nucleus	11.05	17.0
OQU92150	Sorghum	nucleus	13.23	16.95
KXG37432	Sorghum	plastid	11.63	16.6
OQU89497	Sorghum	nucleus	10.61	15.7
KXG19523	Sorghum	nucleus	8.43	11.79
KXG30460	Sorghum	nucleus	8.28	11.26

Protein Annotations

MapMan:15.5.32	MapMan:26.1.1.4	Gene3D:4.10.280.10	UniProt:A0A1B6P6I0	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638
EnsemblPlants:KXG21255	ProteinID:KXG21255	ProteinID:KXG21255.1	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565
PANTHER:PTHR12565:SF284	SMART:SM00353	EnsemblPlantsGene:SORBI_3009G036400	SUPFAM:SSF47459	UniParc:UPI00081AE614	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:3351538..3354991

Molecular Weight (calculated)

72104.8 Da

IEP (calculated)

7.704

GRAVY (calculated)

-0.202

Length

688 amino acids

Sequence
(BLAST)

001: MTSFIRCSDL VKVNYPQTPA NKQLFTSWKQ AFCVVLLRIY IPKIPPGQAH ASPLPSPSRP HLPSPPLLGN PSLARPEPER RRLLVVLGRG SCCYGGRCRV
101: AFLNCSCSCS CPHLFSFLPS ISLLLPLLSS LLRPSACVLH PPPPVAAPTA PAPLMTGPGD ELAELLWDHG PALRRPPPPF QPFTCSAAGS SRSHELKRHP
201: VPVPVPLGMH THGAGLGLGG LPVHDDEDDA VPWLHCPVVV DDGDADTAPL PPEYCASLLS EYSEAAAPAA TASHAAAVVP AAPPPPEAAV ANKLAPPSAT
301: GSGVGEGVLN FTFFSRPLQR PQAASAAASH PVESTVVQAA TNRLRSTPLF SEQRMAWLQP PKAPRATAAA AATPPPPPPP PPAPPQLAPM LPDTRHGETV
401: AQPRSQPDAR PPDAAAVTAS SVCSGNGDRS QLKRSCHLAA DCSVSPDEDM DDEPGATRRS AARSAKRSRT AEVHNMSERR RRDRINEKMR ALQELIPNCN
501: KIDKASMLEE AIEYLKTLQL QVQMMSMGTG LCMPPAAMLL PAMHQHMQAL HHHHHHPMAH FPHLGMGLGY GMGMGMGATA AAGFDMLPRV AAGAHFPCPP
601: MAMPPPPGAA MFGVPGTGMA TLPAAFAHMA GAAPAGQMEA GAGDAAPAAA AAAAAAAPAR PEEAEHPPVR GVAQGDQEAQ QQQHPKQT

Best Arabidopsis Sequence Match ( AT1G09530.1 )
(BLAST)

001: MPLFELFRLT KAKLESAQDR NPSPPVDEVV ELVWENGQIS TQSQSSRSRN IPPPQANSSR AREIGNGSKT TMVDEIPMSV PSLMTGLSQD DDFVPWLNHH
101: PSLDGYCSDF LRDVSSPVTV NEQESDMAVN QTAFPLFQRR KDGNESAPAA SSSQYNGFQS HSLYGSDRAR DLPSQQTNPD RFTQTQEPLI TSNKPSLVNF
201: SHFLRPATFA KTTNNNLHDT KEKSPQSPPN VFQTRVLGAK DSEDKVLNES VASATPKDNQ KACLISEDSC RKDQESEKAV VCSSVGSGNS LDGPSESPSL
301: SLKRKHSNIQ DIDCHSEDVE EESGDGRKEA GPSRTGLGSK RSRSAEVHNL SERRRRDRIN EKMRALQELI PNCNKVDKAS MLDEAIEYLK SLQLQVQIMS
401: MASGYYLPPA VMFPPGMGHY PAAAAAMAMG MGMPYAMGLP DLSRGGSSVN HGPQFQVSGM QQQPVAMGIP RVSGGGIFAG SSTIGNGSTR DLSGSKDQTT
501: TNNNSNLKPI KRKQGSSDQF CGSS

Arabidopsis Description

PIF3Transcription factor PIF3 [Source:UniProtKB/Swiss-Prot;Acc:O80536]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.