CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER99234
EES01849
EES02078
EES04085
KXG21255
KXG32305
KXG38359
OQU83614
OQU89229
OQU90254

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G61380.1	EES01849	AT1G33470.1	21798944
AT5G61380.1	EES02078	AT1G33470.1	21798944
AT5G61380.1	OQU83614	AT1G68050.1	14654842
AT5G61380.1	KXG38359	AT2G33410.1	21798944
AT5G61380.1	KXG21255	AT2G46970.1	11828029
AT5G61380.1	KXG32305	AT2G46970.1	11828029
AT5G61380.1	OQU90254	AT3G16980.1	21798944
AT5G61380.1	EES04085	AT3G24650.1	10743655
AT5G61380.1	OQU89229	AT3G24650.1	10743655
AT5G61380.1	EER99234	AT5G24470.1	20407420

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d017241_P002	Maize	nucleus	89.89	91.1
Zm00001d051114_P001	Maize	nucleus	88.55	84.98
Zm00001d003811_P001	Maize	cytosol	51.91	84.47
Zm00001d043140_P001	Maize	cytosol	48.66	83.88
Zm00001d018818_P001	Maize	cytosol	48.66	83.88
Os02t0618200-01	Rice	nucleus	82.82	83.78
Zm00001d044406_P001	Maize	cytosol	48.09	82.89
TraesCS6B01G253900.1	Wheat	nucleus	76.14	77.33
HORVU6Hr1G057630.1	Barley	nucleus	75.95	76.25
TraesCS6A01G227900.2	Wheat	endoplasmic reticulum, plasma membrane, plastid	76.34	71.17
TraesCS6D01G207100.2	Wheat	endoplasmic reticulum, nucleus, plastid	76.14	70.49
Zm00001d005366_P001	Maize	cytosol	54.96	53.14
GSMUA_Achr10P...	Banana	nucleus	49.05	47.42
GSMUA_Achr9P19550_001	Banana	nucleus	46.95	46.68
GSMUA_Achr2P04570_001	Banana	nucleus	48.85	46.63
VIT_17s0000g06520.t01	Wine grape	cytosol	13.74	45.28
KRH54582	Soybean	nucleus	47.14	44.27
Solyc06g069690.2.1	Tomato	nucleus	42.18	44.02
KRH63298	Soybean	nucleus	46.76	43.75
KRH56889	Soybean	nucleus	46.76	42.61
VIT_17s0000g06570.t01	Wine grape	nucleus	44.08	41.92
PGSC0003DMT400083086	Potato	nucleus	43.7	41.71
KRH03510	Soybean	nucleus	45.8	41.45
Solyc03g115770.2.1	Tomato	nucleus	43.32	41.12
PGSC0003DMT400050252	Potato	nucleus	42.75	40.65
CDX87210	Canola	nucleus	38.74	40.52
Bra035933.1-P	Field mustard	nucleus	38.17	39.29
CDY02151	Canola	nucleus	39.69	38.03
VIT_17s0000g06560.t01	Wine grape	plastid	9.73	36.69
CDY64140	Canola	nucleus	39.5	36.13
Bra012964.1-P	Field mustard	nucleus	39.5	35.94
AT5G61380.1	Thale cress	nucleus	41.41	35.11
OQU81435	Sorghum	mitochondrion	12.02	21.65
EER99234	Sorghum	nucleus	22.71	18.89
EES08014	Sorghum	nucleus	22.71	17.07
EER92434	Sorghum	nucleus	23.09	15.82

Protein Annotations

MapMan:27.1.3	Gene3D:3.40.50.2300	EntrezGene:8072479	UniProt:C5XXQ3	InterPro:CCT_domain	InterPro:CheY-like_superfamily
EnsemblPlants:EES05438	ProteinID:EES05438	ProteinID:EES05438.1	GO:GO:0000160	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0007154	GO:GO:0007165	GO:GO:0007623
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0010031	GO:GO:0010468
GO:GO:0010629	InterPro:IPR001789	InterPro:IPR010402	PFAM:PF00072	PFAM:PF06203	PFscan:PS50110
PFscan:PS51017	PANTHER:PTHR43874	PANTHER:PTHR43874:SF1	SMART:SM00448	EnsemblPlantsGene:SORBI_3004G216700	SUPFAM:SSF52172
InterPro:Sig_transdc_resp-reg_receiver	UniParc:UPI0001A8534D	RefSeq:XP_002452462.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:+:56625893..56628817

Molecular Weight (calculated)

58169.3 Da

IEP (calculated)

6.249

GRAVY (calculated)

-0.623

Length

524 amino acids

Sequence
(BLAST)

001: MVGGGEGDRV GGGGGGGGGL GVGGGQQFVD RSKVRILLCD GDATSSREVL RLLCNCSYHV TCAKSPRQVI NILNYEGGEI DIILAEVDLP VSKCFKMLKY
101: IARNKDLRHI PIIMMSNRDE VSVVVKCLRL GAAEYLVKPL RTNELLNLWT HVWRRRRMLG LPEKNFFHDN FELVLSEPSD ANTNSTTLLS DETDDRPKEN
201: MNQETGTSNQ LEYESNPSVA EPDQRDKMEG VPGSVVDASQ ASSPGRMFSR PIKTNLRIAE SSAFLAYVKT STPTTSSLDS ELQRGGSQLD SLDNQGNCSS
301: ATDRSDTVTD VNIRNKEAFE MPVQYPMVCF SSSNTHMERS NEGHNDTSGT PPVYHFPFYY PGMVEHNMAV SSVQNFQANI NNAQAHTPPT MLPQYNVYPQ
401: CHGLPMISSF QFNPAGMNMH SSHLPTQNVW SSASSTPMPE ETCNRSERRA AALAKFRQKR KERCFDKKVR YVNRKKLAET RPRVRGQFVR QASNTDITST
501: GDDISEDEDD DPSSREVDIV SSPE

Best Arabidopsis Sequence Match ( AT5G61380.1 )
(BLAST)

001: MDLNGECKGG DGFIDRSRVR ILLCDNDSTS LGEVFTLLSE CSYQVTAVKS ARQVIDALNA EGPDIDIILA EIDLPMAKGM KMLRYITRDK DLRRIPVIMM
101: SRQDEVPVVV KCLKLGAADY LVKPLRTNEL LNLWTHMWRR RRMLGLAEKN MLSYDFDLVG SDQSDPNTNS TNLFSDDTDD RSLRSTNPQR GNLSHQENEW
201: SVATAPVHAR DGGLGADGTA TSSLAVTAIE PPLDHLAGSH HEPMKRNSNP AQFSSAPKKS RLKIGESSAF FTYVKSTVLR TNGQDPPLVD GNGSLHLHRG
301: LAEKFQVVAS EGINNTKQAR RATPKSTVLR TNGQDPPLVN GNGSHHLHRG AAEKFQVVAS EGINNTKQAH RSRGTEQYHS QGETLQNGAS YPHSLERSRT
401: LPTSMESHGR NYQEGNMNIP QVAMNRSKDS SQVDGSGFSA PNAYPYYMHG VMNQVMMQSA AMMPQYGHQI PHCQPNHPNG MTGYPYYHHP MNTSLQHSQM
501: SLQNGQMSMV HHSWSPAGNP PSNEVRVNKL DRREEALLKF RRKRNQRCFD KKIRYVNRKR LAERRPRVKG QFVRKMNGVN VDLNGQPDSA DYDDEEEEEE
601: EEEEENRDSS PQDDALGT

Arabidopsis Description

APRR1Two-component response regulator-like APRR1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LKL2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.