Factsheet for Zm00001d017241_P002

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d006212_P002
Zm00001d007445_P001
Zm00001d008205_P001
Zm00001d009215_P001
Zm00001d012238_P003
Zm00001d014058_P002
Zm00001d016258_P001
Zm00001d021291_P002
Zm00001d022141_P007
Zm00001d024783_P001
Zm00001d032739_P001
Zm00001d040536_P005
Zm00001d042042_P001
Zm00001d042396_P003
Zm00001d042641_P001
Zm00001d053091_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G61380.1	Zm00001d012238_P003	AT1G33470.1	21798944
AT5G61380.1	Zm00001d042042_P001	AT1G33470.1	21798944
AT5G61380.1	Zm00001d042641_P001	AT1G33470.1	21798944
AT5G61380.1	Zm00001d007445_P001	AT1G68050.1	14654842
AT5G61380.1	Zm00001d053091_P001	AT1G68050.1	14654842
AT5G61380.1	Zm00001d014058_P002	AT2G33410.1	21798944
AT5G61380.1	Zm00001d032739_P001	AT2G33410.1	21798944
AT5G61380.1	Zm00001d008205_P001	AT2G46970.1	11828029
AT5G61380.1	Zm00001d024783_P001	AT2G46970.1	11828029
AT5G61380.1	Zm00001d040536_P005	AT2G46970.1	11828029
AT5G61380.1	Zm00001d009215_P001	AT3G16980.1	21798944
AT5G61380.1	Zm00001d022141_P007	AT3G16980.1	21798944
AT5G61380.1	Zm00001d042396_P003	AT3G24650.1	10743655
AT5G61380.1	Zm00001d006212_P002	AT5G24470.1	20407420
AT5G61380.1	Zm00001d016258_P001	AT5G24470.1	20407420
AT5G61380.1	Zm00001d021291_P002	AT5G24470.1	20407420

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES05438	Sorghum	nucleus	91.1	89.89
Zm00001d003811_P001	Maize	cytosol	53.0	85.09
Zm00001d018818_P001	Maize	cytosol	49.71	84.54
Zm00001d043140_P001	Maize	cytosol	49.71	84.54
Zm00001d044406_P001	Maize	cytosol	49.13	83.55
Zm00001d051114_P001	Maize	nucleus	88.01	83.33
Os02t0618200-01	Rice	nucleus	80.46	80.31
TraesCS6B01G253900.1	Wheat	nucleus	72.92	73.06
HORVU6Hr1G057630.1	Barley	nucleus	73.11	72.41
TraesCS6A01G227900.2	Wheat	endoplasmic reticulum, plasma membrane, plastid	73.31	67.44
TraesCS6D01G207100.2	Wheat	endoplasmic reticulum, nucleus, plastid	72.73	66.43
Zm00001d005366_P001	Maize	cytosol	56.29	53.69
GSMUA_Achr10P...	Banana	nucleus	48.94	46.68
GSMUA_Achr2P04570_001	Banana	nucleus	48.74	45.9
GSMUA_Achr9P19550_001	Banana	nucleus	46.42	45.54
VIT_17s0000g06520.t01	Wine grape	cytosol	13.93	45.28
KRH54582	Soybean	nucleus	46.23	42.83
Solyc06g069690.2.1	Tomato	nucleus	41.59	42.83
KRH63298	Soybean	nucleus	45.84	42.32
KRH56889	Soybean	nucleus	46.03	41.39
VIT_17s0000g06570.t01	Wine grape	nucleus	44.1	41.38
KRH03510	Soybean	nucleus	45.65	40.76
PGSC0003DMT400083086	Potato	nucleus	43.13	40.62
Solyc03g115770.2.1	Tomato	nucleus	42.94	40.22
CDX87210	Canola	nucleus	38.68	39.92
PGSC0003DMT400050252	Potato	nucleus	42.36	39.75
Bra035933.1-P	Field mustard	nucleus	38.1	38.7
CDY02151	Canola	nucleus	39.85	37.66
VIT_17s0000g06560.t01	Wine grape	plastid	9.86	36.69
CDY64140	Canola	nucleus	39.65	35.78
Bra012964.1-P	Field mustard	nucleus	39.85	35.76
AT5G61380.1	Thale cress	nucleus	41.2	34.47
Zm00001d006212_P002	Maize	nucleus	22.24	18.2
Zm00001d021291_P002	Maize	mitochondrion, plastid	21.86	16.64
Zm00001d052781_P005	Maize	nucleus	22.05	16.43
Zm00001d004875_P002	Maize	nucleus	22.05	16.4
Zm00001d047761_P005	Maize	nucleus	23.21	15.67
Zm00001d007240_P001	Maize	nucleus	17.8	15.54
Zm00001d016258_P001	Maize	cytosol	6.19	15.46

Protein Annotations

EntrezGene:100526751	MapMan:27.1.3	Gene3D:3.40.50.2300	UniProt:A0A1D6HD83	ProteinID:AQK72654.1	ProteinID:AQK72657.1
InterPro:CCT_domain	InterPro:CheY-like_superfamily	GO:GO:0000160	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0009987	InterPro:IPR001789	InterPro:IPR010402	PFAM:PF00072	PFAM:PF06203
PFscan:PS50110	PFscan:PS51017	PANTHER:PTHR43874	PANTHER:PTHR43874:SF1	SMART:SM00448	SUPFAM:SSF52172
InterPro:Sig_transdc_resp-reg_receiver	UniParc:UPI0004DE8715	EnsemblPlantsGene:Zm00001d017241	EnsemblPlants:Zm00001d017241_P002	EnsemblPlants:Zm00001d017241_T002	SEG:seg

Description

Two-component response regulator-like APRR1

Coordinates

chr5:+:190060998..190063941

Molecular Weight (calculated)

57562.5 Da

IEP (calculated)

6.743

GRAVY (calculated)

-0.600

Length

517 amino acids

Sequence
(BLAST)

001: MVGGGEGDRV GGGVGVGGGQ QFVDRSKVRI LLCDGDASSS REVLRLLCNC SYHVTCAKSP RQVINILNYE GGEIDIILAE VDLPVSKCFK MLKYIARNKD
101: LRHIPIIMMS NRDEVSVVVK CLRLGAAEYL VKPLRTNELL NLWTHVWRRR RMLGLPEKNF FNDNFELVLS EPSDANTNSA TLLSDETDDR PKENTNQETG
201: TSNQLEYESN PSVAERDQRD KIGAPGSALD ASQSSTPGRM FSRPIKTNLK VAESSAFLAY VKSSTPATSS FDSGLQRGDS RLDSLDNHGN CSSATDRSDT
301: GADVNIRNKE AFEMPVQYPM VCFSSSSMHM ERSNEGHNDT SGTPPAYHFP FYYPGMVEHN MALSSVQNFQ ANINSAQAHT PPAMLHQYNV FSQCHSLPMI
401: SPFQFNTSGM SMHSSHLPTQ NVWSSASSTP TPDETCNRSE RRAAALAKFR QKRKERCFDK KVRYVNRKKL AETRLRVRGQ FVRHASNMDI ISTGDDISED
501: EDDDPTSREV DMISSPE

Best Arabidopsis Sequence Match ( AT5G61380.1 )
(BLAST)

001: MDLNGECKGG DGFIDRSRVR ILLCDNDSTS LGEVFTLLSE CSYQVTAVKS ARQVIDALNA EGPDIDIILA EIDLPMAKGM KMLRYITRDK DLRRIPVIMM
101: SRQDEVPVVV KCLKLGAADY LVKPLRTNEL LNLWTHMWRR RRMLGLAEKN MLSYDFDLVG SDQSDPNTNS TNLFSDDTDD RSLRSTNPQR GNLSHQENEW
201: SVATAPVHAR DGGLGADGTA TSSLAVTAIE PPLDHLAGSH HEPMKRNSNP AQFSSAPKKS RLKIGESSAF FTYVKSTVLR TNGQDPPLVD GNGSLHLHRG
301: LAEKFQVVAS EGINNTKQAR RATPKSTVLR TNGQDPPLVN GNGSHHLHRG AAEKFQVVAS EGINNTKQAH RSRGTEQYHS QGETLQNGAS YPHSLERSRT
401: LPTSMESHGR NYQEGNMNIP QVAMNRSKDS SQVDGSGFSA PNAYPYYMHG VMNQVMMQSA AMMPQYGHQI PHCQPNHPNG MTGYPYYHHP MNTSLQHSQM
501: SLQNGQMSMV HHSWSPAGNP PSNEVRVNKL DRREEALLKF RRKRNQRCFD KKIRYVNRKR LAERRPRVKG QFVRKMNGVN VDLNGQPDSA DYDDEEEEEE
601: EEEEENRDSS PQDDALGT

Arabidopsis Description

APRR1Two-component response regulator-like APRR1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LKL2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.