Factsheet for Zm00001d016258_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003811_P001
Zm00001d005366_P001
Zm00001d017241_P002
Zm00001d018818_P001
Zm00001d043140_P001
Zm00001d044406_P001
Zm00001d051114_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46790.1	Zm00001d003811_P001	AT5G61380.1	20407420
AT2G46790.1	Zm00001d005366_P001	AT5G61380.1	20407420
AT2G46790.1	Zm00001d017241_P002	AT5G61380.1	20407420
AT2G46790.1	Zm00001d018818_P001	AT5G61380.1	20407420
AT2G46790.1	Zm00001d043140_P001	AT5G61380.1	20407420
AT2G46790.1	Zm00001d044406_P001	AT5G61380.1	20407420
AT2G46790.1	Zm00001d051114_P001	AT5G61380.1	20407420
AT5G24470.1	Zm00001d003811_P001	AT5G61380.1	20407420
AT5G24470.1	Zm00001d005366_P001	AT5G61380.1	20407420
AT5G24470.1	Zm00001d017241_P002	AT5G61380.1	20407420
AT5G24470.1	Zm00001d018818_P001	AT5G61380.1	20407420
AT5G24470.1	Zm00001d043140_P001	AT5G61380.1	20407420
AT5G24470.1	Zm00001d044406_P001	AT5G61380.1	20407420
AT5G24470.1	Zm00001d051114_P001	AT5G61380.1	20407420

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER99234	Sorghum	nucleus	83.57	27.46
Zm00001d021291_P002	Maize	mitochondrion, plastid	89.86	27.39
Zm00001d006212_P002	Maize	nucleus	80.68	26.42
Os09t0532400-01	Rice	nucleus	65.7	21.83
HORVU5Hr1G081620.4	Barley	nucleus	54.11	18.15
TraesCS5A01G320300.1	Wheat	nucleus	53.14	18.12
TraesCS5B01G320500.1	Wheat	nucleus	52.66	17.93
TraesCS5D01G326200.3	Wheat	nucleus	52.66	17.5
GSMUA_Achr4P04970_001	Banana	nucleus	38.16	12.12
GSMUA_Achr9P24280_001	Banana	nucleus	38.16	11.83
VIT_15s0048g02540.t01	Wine grape	nucleus	31.88	10.3
Solyc03g081240.2.1	Tomato	nucleus	33.82	10.29
CDY59590	Canola	nucleus	24.15	10.27
Zm00001d043140_P001	Maize	cytosol	14.98	10.2
Zm00001d018818_P001	Maize	cytosol	14.98	10.2
PGSC0003DMT400001574	Potato	nucleus	33.33	10.1
CDY05436	Canola	nucleus	24.64	10.1
CDX80047	Canola	nucleus	19.32	10.08
Bra029407.1-P	Field mustard	nucleus	24.64	10.02
Zm00001d044406_P001	Maize	cytosol	14.49	9.87
Bra036517.1-P	Field mustard	nucleus	23.19	9.66
CDY19831	Canola	nucleus	23.19	9.66
Zm00001d003811_P001	Maize	cytosol	14.98	9.63
Bra004507.1-P	Field mustard	nucleus	18.84	9.47
CDY41558	Canola	nucleus	18.84	9.47
Zm00001d007240_P001	Maize	nucleus	27.05	9.46
AT5G24470.1	Thale cress	cytosol, nucleus, plastid	25.12	9.32
GSMUA_Achr4P05170_001	Banana	nucleus	33.82	9.15
Bra009768.1-P	Field mustard	nucleus	24.64	9.06
CDX87123	Canola	nucleus	22.22	9.02
VIT_16s0098g00900.t01	Wine grape	nucleus	29.95	9.01
KRH47791	Soybean	nucleus	31.4	9.0
CDX80448	Canola	nucleus	24.15	8.98
KRH68964	Soybean	nucleus	29.95	8.96
KRG97248	Soybean	nucleus	29.47	8.91
KRH64297	Soybean	nucleus	29.47	8.83
KRH06354	Soybean	nucleus	29.95	8.78
AT2G46790.1	Thale cress	nucleus	18.84	8.33
KRH53629	Soybean	nucleus	28.02	8.29
CDY48015	Canola	nucleus	17.87	8.03
PGSC0003DMT400029402	Potato	nucleus	22.71	7.34
CDX88107	Canola	plastid	24.64	7.33
Zm00001d047761_P005	Maize	nucleus	27.05	7.31
Solyc10g005030.2.1	Tomato	nucleus	22.71	7.29
Zm00001d052781_P005	Maize	nucleus	24.15	7.2
Zm00001d004875_P002	Maize	nucleus	24.15	7.19
Zm00001d017241_P002	Maize	nucleus	15.46	6.19
Zm00001d005366_P001	Maize	cytosol	14.98	5.72
Zm00001d051114_P001	Maize	nucleus	14.98	5.68
Bra040484.1-P	Field mustard	cytosol	17.87	4.49
CDY27522	Canola	nucleus	17.87	4.3

Protein Annotations

EnsemblPlants:Zm00001d016258_P001	EnsemblPlants:Zm00001d016258_T001	EnsemblPlantsGene:Zm00001d016258	Gene3D:3.40.50.2300	GO:GO:0000160	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987
InterPro:CheY-like_superfamily	InterPro:IPR001789	InterPro:Sig_transdc_resp-reg_receiver	PANTHER:PTHR43874	PANTHER:PTHR43874:SF11	PFscan:PS50110
ProteinID:AQK70380.1	SUPFAM:SSF52172	UniParc:UPI0008437F05	UniProt:A0A1D6H6F8	MapMan:35.1	:

Description

Two-component response regulator-like APRR9

Coordinates

chr5:+:153894585..153895931

Molecular Weight (calculated)

23742.1 Da

IEP (calculated)

8.385

GRAVY (calculated)

-0.943

Length

207 amino acids

Sequence
(BLAST)

001: MSSHDSVSMV FKCMLKGATD FLVKPIRKNE LRNLWQHVWR KQLANGGPNV QHIQREENFA ERIQQKTGVT QADNLDRDVP CKNRECSEQE SDAQSSCTRS
101: ELEAESKQTN NILEYKQSTQ RHLSIPSHKN VELNGQTKIQ TAKGNNLILA REDDLSPNKR TCLNENNSER ASRDMELVHI MENQKYNTQR EVAVCRLTAA
201: KMPLPLP

Best Arabidopsis Sequence Match ( AT5G24470.1 )
(BLAST)

001: MTSSEEVVEV TVVKAPEAGG GKLSRRKIRK KDAGVDGLVK WERFLPKIAL RVLLVEADDS TRQIIAALLR KCSYRVAAVP DGLKAWEMLK GKPESVDLIL
101: TEVDLPSISG YALLTLIMEH DICKNIPVIM MSTQDSVNTV YKCMLKGAAD YLVKPLRRNE LRNLWQHVWR RQTSLAPDSF PWNESVGQQK AEGASANNSN
201: GKRDDHVVSG NGGDAQSSCT RPEMEGESAD VEVSARDAVQ MECAKSQFNE TRLLANELQS KQAEAIDFMG ASFRRTGRRN REESVAQYES RIELDLSLRR
301: PNASENQSSG DRPSLHPSSA SAFTRYVHRP LQTQCSASPV VTDQRKNVAA SQDDNIVLMN QYNTSEPPPN APRRNDTSFY TGADSPGPPF SNQLNSWPGQ
401: SSYPTPTPIN NIQFRDPNTA YTSAMAPASL SPSPSSVSPH EYSSMFHPFN SKPEGLQDRD CSMDVDERRY VSSATEHSAI GNHIDQLIEK KNEDGYSLSV
501: GKIQQSLQRE AALTKFRMKR KDRCYEKKVR YESRKKLAEQ RPRIKGQFVR QVQSTQAP

Arabidopsis Description

APRR5Two-component response regulator-like APRR5 [Source:UniProtKB/Swiss-Prot;Acc:Q6LA42]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.