Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G46790.1 | CDX87210 | AT5G61380.1 | 20407420 |
| AT2G46790.1 | CDY02151 | AT5G61380.1 | 20407420 |
| AT2G46790.1 | CDY64140 | AT5G61380.1 | 20407420 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX80047 | Canola | nucleus | 87.62 | 90.93 |
| CDY48015 | Canola | nucleus | 77.18 | 68.98 |
| AT2G46790.1 | Thale cress | nucleus | 76.46 | 67.31 |
| CDY09224 | Canola | nucleus | 12.62 | 40.62 |
| CDY27522 | Canola | nucleus | 78.88 | 37.75 |
| CDY59590 | Canola | nucleus | 39.81 | 33.68 |
| CDY19831 | Canola | nucleus | 39.81 | 33.0 |
| CDY05436 | Canola | nucleus | 39.81 | 32.48 |
| CDX87123 | Canola | nucleus | 39.81 | 32.16 |
| CDX80201 | Canola | nucleus | 36.41 | 31.85 |
| CDY31578 | Canola | nucleus | 37.14 | 31.16 |
| CDX80448 | Canola | nucleus | 40.78 | 30.16 |
| Os09t0532400-01 | Rice | nucleus | 40.29 | 26.65 |
| TraesCS5A01G320300.1 | Wheat | nucleus | 38.84 | 26.36 |
| HORVU5Hr1G081620.4 | Barley | nucleus | 39.32 | 26.26 |
| TraesCS5B01G320500.1 | Wheat | nucleus | 38.59 | 26.15 |
| EER99234 | Sorghum | nucleus | 39.32 | 25.71 |
| GSMUA_Achr4P04970_001 | Banana | nucleus | 39.08 | 24.69 |
| Zm00001d006212_P002 | Maize | nucleus | 37.86 | 24.68 |
| GSMUA_Achr9P24280_001 | Banana | nucleus | 39.81 | 24.55 |
| CDX88107 | Canola | plastid | 41.02 | 24.28 |
| TraesCS5D01G326200.3 | Wheat | nucleus | 35.19 | 23.27 |
| Zm00001d021291_P002 | Maize | mitochondrion, plastid | 37.62 | 22.83 |
| GSMUA_Achr4P05170_001 | Banana | nucleus | 40.05 | 21.57 |
| CDY10422 | Canola | nucleus | 36.41 | 21.4 |
| CDY55688 | Canola | nucleus | 35.68 | 21.34 |
| CDX70344 | Canola | nucleus | 36.41 | 21.31 |
| CDY04868 | Canola | nucleus | 35.68 | 21.21 |
| CDX87210 | Canola | nucleus | 23.79 | 19.56 |
| Zm00001d016258_P001 | Maize | cytosol | 9.47 | 18.84 |
| CDY02151 | Canola | nucleus | 23.79 | 17.92 |
| CDY64140 | Canola | nucleus | 24.03 | 17.28 |
Protein Annotations
| MapMan:27.1.4 | Gene3D:3.40.50.2300 | GO:A0A078HXV8 | UniProt:A0A078HXV8 | InterPro:CCT_domain | EnsemblPlants:CDY41558 |
| ProteinID:CDY41558 | ProteinID:CDY41558.1 | InterPro:CheY-like_superfamily | GO:GO:0000160 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00073193001 | InterPro:IPR001789 | InterPro:IPR010402 |
| PFAM:PF00072 | PFAM:PF06203 | PFscan:PS50110 | PFscan:PS51017 | PANTHER:PTHR43874 | PANTHER:PTHR43874:SF11 |
| SMART:SM00448 | SUPFAM:SSF52172 | InterPro:Sig_transdc_resp-reg_receiver | UniParc:UPI0004EF186B | SEG:seg | : |
Description
BnaC04g00640DBnaC04g00640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HXV8]
Coordinates
chrLK032500:+:220607..222521
Molecular Weight (calculated)
45922.4 Da
IEP (calculated)
7.201
GRAVY (calculated)
-0.656
Length
412 amino acids
Sequence
(BLAST)
(BLAST)
001: MAETMMNRIK SSEVVRWEKY LPKTVLKVLL VESDDSTRQI ITALLRNCSY KVVAVSDGLA AWETLKEKSH EIDLILTELD LPAISGFALL ALVMEHEACK
101: NIPVIMMSSQ DSMTMVLKCM LKGAADYLIK PMRKNELKNL WQHVWRRLTL RDGHNGHGLS LPASQQNVED SDETSADHSD QGSGAQATTS CNGNNKLMED
201: VTMDLIGGID KRSECFYGDN ARDEYVGPEL GLSLKRSCSG SFEKQDQSKQ QKLSLSDESV GIITLTCRYE NSQAAEKADV GVEPSSSADP KTPSESHEKL
301: LRCDHGSATT SSNHENMGSS SLSGRNELSF RNQVGSESTN DVKGKEQEEE GCGLSVQERR SQREAALMKF RLKRKDRCFD KKVRYQSRKK LAEQRPRVKG
401: QFVRAVNSDA SK
101: NIPVIMMSSQ DSMTMVLKCM LKGAADYLIK PMRKNELKNL WQHVWRRLTL RDGHNGHGLS LPASQQNVED SDETSADHSD QGSGAQATTS CNGNNKLMED
201: VTMDLIGGID KRSECFYGDN ARDEYVGPEL GLSLKRSCSG SFEKQDQSKQ QKLSLSDESV GIITLTCRYE NSQAAEKADV GVEPSSSADP KTPSESHEKL
301: LRCDHGSATT SSNHENMGSS SLSGRNELSF RNQVGSESTN DVKGKEQEEE GCGLSVQERR SQREAALMKF RLKRKDRCFD KKVRYQSRKK LAEQRPRVKG
401: QFVRAVNSDA SK
001: MGEIVVLSSD DGMETIKNRV KSSEVVQWEK YLPKTVLRVL LVESDYSTRQ IITALLRKCC YKVVAVSDGL AAWEVLKEKS HNIDLILTEL DLPSISGFAL
101: LALVMEHEAC KNIPVIMMSS QDSIKMVLKC MLRGAADYLI KPMRKNELKN LWQHVWRRLT LRDDPTAHAQ SLPASQHNLE DTDETCEDSR YHSDQGSGAQ
201: AINYNGHNKL MENGKSVDER DEFKETFDVT MDLIGGIDKR PDSIYKDKSR DECVGPELGL SLKRSCSVSF ENQDESKHQK LSLSDASAFS RFEESKSAEK
301: AVVALEESTS GEPKTPTESH EKLRKVTSDQ GSATTSSNQE NIGSSSVSFR NQVLQSTVTN QKQDSPIPVE SNREKAASKE VEAGSQSTNE GIAGQSSSTE
401: KPKEEESAKQ RWSRSQREAA LMKFRLKRKD RCFDKKVRYQ SRKKLAEQRP RVKGQFVRTV NSDASTKS
101: LALVMEHEAC KNIPVIMMSS QDSIKMVLKC MLRGAADYLI KPMRKNELKN LWQHVWRRLT LRDDPTAHAQ SLPASQHNLE DTDETCEDSR YHSDQGSGAQ
201: AINYNGHNKL MENGKSVDER DEFKETFDVT MDLIGGIDKR PDSIYKDKSR DECVGPELGL SLKRSCSVSF ENQDESKHQK LSLSDASAFS RFEESKSAEK
301: AVVALEESTS GEPKTPTESH EKLRKVTSDQ GSATTSSNQE NIGSSSVSFR NQVLQSTVTN QKQDSPIPVE SNREKAASKE VEAGSQSTNE GIAGQSSSTE
401: KPKEEESAKQ RWSRSQREAA LMKFRLKRKD RCFDKKVRYQ SRKKLAEQRP RVKGQFVRTV NSDASTKS
Arabidopsis Description
APRR9Two-component response regulator-like APRR9 [Source:UniProtKB/Swiss-Prot;Acc:Q8L500]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.