CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31578	Canola	nucleus	92.14	88.39
AT5G60100.2	Thale cress	nucleus	80.04	72.22
CDY09224	Canola	nucleus	18.47	67.97
OQU81435	Sorghum	mitochondrion	25.27	40.89
CDY41558	Canola	nucleus	31.85	36.41
CDX80047	Canola	nucleus	28.03	33.25
TraesCSU01G199500.3	Wheat	nucleus	30.79	32.81
CDY48015	Canola	nucleus	31.21	31.89
CDY55688	Canola	nucleus	45.65	31.2
CDY04868	Canola	nucleus	45.44	30.88
CDY10422	Canola	nucleus	45.65	30.67
GSMUA_Achr8P01990_001	Banana	cytosol, nucleus, plastid	47.98	30.54
CDX70344	Canola	nucleus	45.65	30.54
TraesCSU01G221500.1	Wheat	nucleus	28.45	30.39
CDY59590	Canola	nucleus	31.0	29.98
GSMUA_AchrUn_...	Banana	nucleus	48.62	29.9
VIT_13s0067g03390.t01	Wine grape	nucleus	48.2	29.52
GSMUA_Achr9P04240_001	Banana	nucleus	47.56	28.46
TraesCS4B01G198700.1	Wheat	nucleus	45.01	27.97
CDY19831	Canola	nucleus	29.3	27.77
CDY05436	Canola	nucleus	29.72	27.72
Os07t0695100-01	Rice	nucleus	43.31	27.49
Solyc04g049670.2.1	Tomato	nucleus	36.94	27.49
TraesCS4A01G105300.1	Wheat	cytosol, mitochondrion, nucleus, plastid	38.85	27.48
CDX87123	Canola	nucleus	29.72	27.45
HORVU4Hr1G057550.2	Barley	nucleus	43.95	27.27
TraesCS4D01G199600.1	Wheat	nucleus	44.16	27.26
TraesCS2D01G079600.2	Wheat	nucleus	38.64	27.04
TraesCS2A01G081900.2	Wheat	nucleus	38.85	26.99
Os03t0284100-01	Rice	nucleus	42.46	26.85
EER92434	Sorghum	nucleus	43.31	26.67
TraesCSU01G196100.2	Wheat	nucleus	38.22	26.59
Zm00001d047761_P005	Maize	nucleus	43.1	26.5
HORVU2Hr1G013400.34	Barley	cytosol, nucleus, plastid	38.43	26.19
CDX80448	Canola	nucleus	30.36	25.67
Zm00001d007240_P001	Maize	nucleus	32.06	25.51
CDX88107	Canola	plastid	31.21	21.12
CDX87210	Canola	nucleus	20.81	19.56
CDY02151	Canola	nucleus	21.23	18.28
CDY64140	Canola	nucleus	21.23	17.45
CDY27522	Canola	nucleus	31.85	17.42

Protein Annotations

MapMan:27.1.4	Gene3D:3.40.50.2300	GO:A0A078CSQ8	InterPro:CCT_domain	EnsemblPlants:CDX80201	ProteinID:CDX80201
ProteinID:CDX80201.1	InterPro:CheY-like_superfamily	GO:GO:0000160	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00133143001	InterPro:IPR001789
InterPro:IPR010402	PFAM:PF00072	PFAM:PF06203	PFscan:PS50110	PFscan:PS51017	PANTHER:PTHR43874
PANTHER:PTHR43874:SF34	SMART:SM00448	SUPFAM:SSF52172	InterPro:Sig_transdc_resp-reg_receiver	UniParc:UPI0004EE2A69	SEG:seg

Description

BnaC09g35410D

Coordinates

chrLK031820:+:441185..444419

Molecular Weight (calculated)

51574.6 Da

IEP (calculated)

5.704

GRAVY (calculated)

-0.838

Length

471 amino acids

Sequence
(BLAST)

001: MCFNKNDMAN EVVTERPAFG SSEEDDSRVE DTAGNANNLL QITQQPIAPV VNWERYLPVR SLKVLLVEND DSTRHIVTAL LKNCSYEVTA VPDVLEAWRV
101: LEDENSCIDL VLTEVVMPVN SGTGLLSKIM SHNTLKNIPI IMMSSHDSMV LVFKCLSNGA VDFLVKPIRK NELKNLWQHV WRRCHSSSGS GSESGIHNKK
201: SVKTESTDDE GSEDDASMSD EDHGNDDDGS NGEGGSDNGS GTQSSWTKRA SDMNVGTYGN EREGVNKLKE VDDENGQIGN GSQAGQCMSK KAVQALERNN
301: GDLLNRSSGN SQVETKTPSS NPEDLQSLEL TLTKPKEAGD QRAGGDRSVL RHSNHSAFSK YNNGATSANK APEENVGSCS PQDSPVAKII GSSSSSDNPS
401: NQQSSGSDRS AQREAALIKF RLKRKERCFE KKVRYHSRKK LAEQRPRIKG QFIRKMDASK SGNECQSSED N

Best Arabidopsis Sequence Match ( AT5G60100.5 )
(BLAST)

001: MCFNNIETGD EVETERQVFG SSEEDEFRVE DTARNTNNVQ ISQQQQQPLA HVVKWERYLP VRSLKVLLVE NDDSTRHIVT ALLKNCSYEV TAVPDVLEAW
101: RILEDEKSCI DLVLTEVDMP VHSGTGLLSK IMSHKTLKNI PVIMMSSHDS MVLVFKCLSN GAVDFLVKPI RKNELKNLWQ HVWRRCHSSS GSGSESGIHD
201: KKSVKPESTQ GSENDASISD EHRNESGSSG GLSNQDGGSD NGSGTQSSWT KRASDTKSTS PSNQFPDAPN KKGTYENGCA HVNRLKEAED QKEQIGTGSQ
301: TGMSMSKKAE EPGDLEKNAK YSVQALERNN DDTLNRSSGN SQVESKAPSS NREDLQSLEQ TLKKTREDRD YKVGDRSVLR HSNLSAFSKY NNGATSAKKA
401: PEENVESCSP HDSPIAKLLG SSSSSDNPLK QQSSGSDRWA QREAALMKFR LKRKERCFEK KVRYHSRKKL AEQRPHVKGQ FIRKRDDHKS GSEDN

Arabidopsis Description

PRR3Pseudo-response regulator 3 [Source:UniProtKB/TrEMBL;Acc:F4JXG7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.