CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX87210
CDY02151
CDY64140

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24470.1	CDX87210	AT5G61380.1	20407420
AT5G24470.1	CDY02151	AT5G61380.1	20407420
AT5G24470.1	CDY64140	AT5G61380.1	20407420

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05436	Canola	nucleus	89.73	86.53
CDX87123	Canola	nucleus	78.85	75.29
CDY19831	Canola	nucleus	75.98	74.45
CDX80448	Canola	nucleus	84.8	74.15
Bra009768.1-P	Field mustard	nucleus	85.22	73.71
AT5G24470.1	Thale cress	cytosol, nucleus, plastid	80.29	70.07
CDX88107	Canola	plastid	85.42	59.77
CDY41558	Canola	nucleus	33.68	39.81
CDX80047	Canola	nucleus	30.8	37.78
CDY48015	Canola	nucleus	35.52	37.53
VIT_16s0098g00900.t01	Wine grape	nucleus	51.33	36.34
Solyc03g081240.2.1	Tomato	nucleus	49.69	35.59
KRH64297	Soybean	nucleus	49.49	34.88
KRH53629	Soybean	nucleus	49.9	34.71
CDY09224	Canola	nucleus	8.62	32.81
PGSC0003DMT400001574	Potato	nucleus	45.38	32.36
CDX80201	Canola	nucleus	29.98	31.0
EER99234	Sorghum	nucleus	39.22	30.32
Os09t0532400-01	Rice	nucleus	38.4	30.02
CDY31578	Canola	nucleus	29.98	29.74
Zm00001d006212_P002	Maize	nucleus	38.4	29.59
TraesCS5B01G320500.1	Wheat	nucleus	36.34	29.11
TraesCS5A01G320300.1	Wheat	nucleus	36.14	29.0
HORVU5Hr1G081620.4	Barley	nucleus	36.55	28.85
GSMUA_Achr9P24280_001	Banana	nucleus	38.4	27.99
GSMUA_Achr4P04970_001	Banana	nucleus	37.37	27.91
Zm00001d021291_P002	Maize	mitochondrion, plastid	38.4	27.54
TraesCS5D01G326200.3	Wheat	nucleus	33.26	26.0
Zm00001d016258_P001	Maize	cytosol	10.27	24.15
GSMUA_Achr4P05170_001	Banana	nucleus	37.37	23.79
CDX70344	Canola	nucleus	31.83	22.02
CDY10422	Canola	nucleus	31.62	21.97
CDX87210	Canola	nucleus	22.59	21.96
CDY55688	Canola	nucleus	31.01	21.92
CDY04868	Canola	nucleus	31.01	21.79
CDY27522	Canola	nucleus	35.52	20.09
CDY02151	Canola	nucleus	22.38	19.93
CDY64140	Canola	nucleus	22.38	19.02

Protein Annotations

MapMan:27.1.4	Gene3D:3.40.50.2300	GO:A0A078J200	UniProt:A0A078J200	InterPro:CCT_domain	EnsemblPlants:CDY59590
ProteinID:CDY59590	ProteinID:CDY59590.1	InterPro:CheY-like_superfamily	GO:GO:0000160	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00027410001	InterPro:IPR001789	InterPro:IPR010402
PFAM:PF00072	PFAM:PF06203	PFscan:PS50110	PFscan:PS51017	PANTHER:PTHR43874	PANTHER:PTHR43874:SF4
SMART:SM00448	SUPFAM:SSF52172	InterPro:Sig_transdc_resp-reg_receiver	UniParc:UPI0004EE1FF9	SEG:seg	:

Description

BnaC02g48700DBnaC02g48700D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J200]

Coordinates

chrLK033784:+:7853..10057

Molecular Weight (calculated)

54393.7 Da

IEP (calculated)

8.207

GRAVY (calculated)

-0.736

Length

487 amino acids

Sequence
(BLAST)

001: MSDEVVEVTV VEKAAEANGE KSARRRTRRK DAAEGGDGLM KWERFLPKIS LRVLLVEADD STRQIVSALL RKCSYRVAAV ADGLKAWEML KGKPESVDLI
101: LTEVDLPSIS GYALLTLIME HDTCKNIPVI MMSTQDSVNT VYKCMLKGAA DYLVKPLRRN ELRNLWQHVW RRQSSQSLVP GSFPIDDSVG HEKPEGASAN
201: NSTSNQETAF ERDQRPVIGN GGDDQSSCSR PEMQGESADV EDSTKEAIDF MGASFRRNTQ GNREESVARY ESMIELDLSL RRPNTCENQS SGERPSLHPS
301: SASAFTRYVH RPQCSVSPLI TNQRKNVAAS EDDNINRYNS SEPLPRQSSY PTTVPFNSIQ FNTAAMTPAS LSPSPSSVSP HEYSSMFHPF NGSMDAEERR
401: HVSSATELSA IGNHCSANSS SVGKNQQSLQ REAALNKFRM KRKDRCFEKK VRYESRKKLA EQRPRIKGQF VRQVQSTETT TTQEAPQ

Best Arabidopsis Sequence Match ( AT2G46790.1 )
(BLAST)

001: MGEIVVLSSD DGMETIKNRV KSSEVVQWEK YLPKTVLRVL LVESDYSTRQ IITALLRKCC YKVVAVSDGL AAWEVLKEKS HNIDLILTEL DLPSISGFAL
101: LALVMEHEAC KNIPVIMMSS QDSIKMVLKC MLRGAADYLI KPMRKNELKN LWQHVWRRLT LRDDPTAHAQ SLPASQHNLE DTDETCEDSR YHSDQGSGAQ
201: AINYNGHNKL MENGKSVDER DEFKETFDVT MDLIGGIDKR PDSIYKDKSR DECVGPELGL SLKRSCSVSF ENQDESKHQK LSLSDASAFS RFEESKSAEK
301: AVVALEESTS GEPKTPTESH EKLRKVTSDQ GSATTSSNQE NIGSSSVSFR NQVLQSTVTN QKQDSPIPVE SNREKAASKE VEAGSQSTNE GIAGQSSSTE
401: KPKEEESAKQ RWSRSQREAA LMKFRLKRKD RCFDKKVRYQ SRKKLAEQRP RVKGQFVRTV NSDASTKS

Arabidopsis Description

APRR9Two-component response regulator-like APRR9 [Source:UniProtKB/Swiss-Prot;Acc:Q8L500]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.