Factsheet for TraesCS5D01G326200.3

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G227900.2
TraesCS6B01G253900.1
TraesCS6D01G207100.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46790.1	TraesCS6A01G227900.2	AT5G61380.1	20407420
AT2G46790.1	TraesCS6B01G253900.1	AT5G61380.1	20407420
AT2G46790.1	TraesCS6D01G207100.2	AT5G61380.1	20407420
AT5G24470.1	TraesCS6A01G227900.2	AT5G61380.1	20407420
AT5G24470.1	TraesCS6B01G253900.1	AT5G61380.1	20407420
AT5G24470.1	TraesCS6D01G207100.2	AT5G61380.1	20407420

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G320300.1	Wheat	nucleus	89.25	91.6
TraesCS5B01G320500.1	Wheat	nucleus	89.25	91.45
HORVU5Hr1G081620.4	Barley	nucleus	85.07	85.9
Os09t0532400-01	Rice	nucleus	62.44	62.44
EER99234	Sorghum	nucleus	60.83	60.16
Zm00001d006212_P002	Maize	nucleus	58.75	57.91
Zm00001d021291_P002	Maize	mitochondrion, plastid	60.35	55.38
Zm00001d016258_P001	Maize	cytosol	17.5	52.66
CDX80047	Canola	nucleus	22.79	35.77
GSMUA_Achr9P24280_001	Banana	nucleus	38.2	35.63
Bra004507.1-P	Field mustard	nucleus	23.27	35.19
CDY41558	Canola	nucleus	23.27	35.19
GSMUA_Achr4P04970_001	Banana	nucleus	35.79	34.2
AT2G46790.1	Thale cress	nucleus	25.2	33.55
CDY59590	Canola	nucleus	26.0	33.26
CDY48015	Canola	nucleus	23.76	32.1
CDY05436	Canola	nucleus	26.0	32.08
Bra029407.1-P	Field mustard	nucleus	26.0	31.83
CDY19831	Canola	nucleus	24.4	30.58
Bra036517.1-P	Field mustard	nucleus	24.4	30.58
CDX87123	Canola	nucleus	24.72	30.2
CDX80448	Canola	nucleus	26.65	29.8
AT5G24470.1	Thale cress	cytosol, nucleus, plastid	26.65	29.75
Bra009768.1-P	Field mustard	nucleus	26.65	29.48
VIT_15s0048g02540.t01	Wine grape	nucleus	30.18	29.33
GSMUA_Achr4P05170_001	Banana	nucleus	35.96	29.28
VIT_16s0098g00900.t01	Wine grape	nucleus	31.94	28.92
PGSC0003DMT400001574	Potato	nucleus	31.46	28.7
Solyc03g081240.2.1	Tomato	nucleus	31.3	28.68
KRH64297	Soybean	nucleus	31.78	28.65
KRG97248	Soybean	nucleus	30.98	28.18
KRH68964	Soybean	nucleus	30.98	27.89
KRH53629	Soybean	nucleus	30.98	27.57
KRH47791	Soybean	nucleus	31.3	27.01
KRH06354	Soybean	nucleus	30.18	26.63
PGSC0003DMT400029402	Potato	nucleus	25.84	25.16
Solyc10g005030.2.1	Tomato	nucleus	25.52	24.65
CDX88107	Canola	plastid	26.65	23.85
TraesCS4D01G112800.1	Wheat	nucleus	25.68	23.12
TraesCS4D01G199600.1	Wheat	nucleus	26.16	21.36
TraesCS2D01G079600.2	Wheat	nucleus	22.95	21.25
CDY27522	Canola	nucleus	24.56	17.77
Bra040484.1-P	Field mustard	cytosol	23.43	17.72
TraesCS6D01G207100.2	Wheat	endoplasmic reticulum, nucleus, plastid	15.41	16.96

Protein Annotations

EnsemblPlants:TraesCS5D01G326200.3	EnsemblPlantsGene:TraesCS5D01G326200	Gene3D:3.40.50.12740	GO:GO:0000160	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0009987	InterPro:CheY-like_superfamily	InterPro:IPR001789	InterPro:Sig_transdc_resp-reg_receiver	PANTHER:PTHR43874
PANTHER:PTHR43874:SF11	PFAM:PF00072	PFscan:PS50110	SEG:seg	SMART:SM00448	SUPFAM:SSF52172
TIGR:cd00156	MapMan:27.1.4	:	:	:	:

Description

No Description!

Coordinates

chr5D:-:418464998..418468281

Molecular Weight (calculated)

68591.2 Da

IEP (calculated)

5.879

GRAVY (calculated)

-0.658

Length

623 amino acids

Sequence
(BLAST)

001: MVRGGQGQEG GLGEREVVNV VDQDGREEEV RRALPMMPVR VLLAEGDDST RHVISALLRK CGYHVSAASD GVKAWELLKE KSFKIDLVLT EVELPLMSGF
101: LLLSTIMEHD ACKNIPVIMM SSNDAVSMVF KCMLKGAADF LVKPIRKNEL RNLWQHVWRK QLANGEIDVQ QIQQEENVAE QHGQKTEMTK AEHSIQNVVR
201: RNRDCSEQES DAQSSCTRSE PEAESKHTNS FLEFKQITER QSSTDPKNTL ENRDPENPSD NKRKKASTDI EVVHIIDDEP KPSTPMEVDI VRTNPQGNGD
301: KWFSIPAHQL ELSLRRSDYG RSEDQEKNDT RTLNHSTSSA FSLYNCRPIS SFGNAGDAQP CSTSATHADL QNKNGDSAAP FQDKADPICH PIRVVALPVP
401: VGGLTFDGQP FWSGAPVAPL LYPQSGPPIW NGRTPVSQEV DTQATSSQQS DPTEMDCQQT ESTQRQEVLP SPTANEKHLH VEIPSDSNPQ QVSPMASESG
501: TGSSTVLNNS GNALSGSACG SSSNRIATPT EQCNASDGAT ENPSMEGSHQ LSQREIALNK FRLKRKERCF EKKVGTRTNL TFPFRSNFFV ASHLLGGAGV
601: YILPLLRRCG TRAGNYLQSS VPG

Best Arabidopsis Sequence Match ( AT5G24470.1 )
(BLAST)

001: MTSSEEVVEV TVVKAPEAGG GKLSRRKIRK KDAGVDGLVK WERFLPKIAL RVLLVEADDS TRQIIAALLR KCSYRVAAVP DGLKAWEMLK GKPESVDLIL
101: TEVDLPSISG YALLTLIMEH DICKNIPVIM MSTQDSVNTV YKCMLKGAAD YLVKPLRRNE LRNLWQHVWR RQTSLAPDSF PWNESVGQQK AEGASANNSN
201: GKRDDHVVSG NGGDAQSSCT RPEMEGESAD VEVSARDAVQ MECAKSQFNE TRLLANELQS KQAEAIDFMG ASFRRTGRRN REESVAQYES RIELDLSLRR
301: PNASENQSSG DRPSLHPSSA SAFTRYVHRP LQTQCSASPV VTDQRKNVAA SQDDNIVLMN QYNTSEPPPN APRRNDTSFY TGADSPGPPF SNQLNSWPGQ
401: SSYPTPTPIN NIQFRDPNTA YTSAMAPASL SPSPSSVSPH EYSSMFHPFN SKPEGLQDRD CSMDVDERRY VSSATEHSAI GNHIDQLIEK KNEDGYSLSV
501: GKIQQSLQRE AALTKFRMKR KDRCYEKKVR YESRKKLAEQ RPRIKGQFVR QVQSTQAP

Arabidopsis Description

APRR5Two-component response regulator-like APRR5 [Source:UniProtKB/Swiss-Prot;Acc:Q6LA42]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.