CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03510
KRH54582
KRH56889
KRH63298

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24470.1	KRH03510	AT5G61380.1	20407420
AT5G24470.1	KRH54582	AT5G61380.1	20407420
AT5G24470.1	KRH56889	AT5G61380.1	20407420
AT5G24470.1	KRH63298	AT5G61380.1	20407420

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53629	Soybean	nucleus	90.3	89.14
VIT_16s0098g00900.t01	Wine grape	nucleus	54.7	54.94
CDY59590	Canola	nucleus	34.88	49.49
Bra029407.1-P	Field mustard	nucleus	35.17	47.74
CDY05436	Canola	nucleus	34.73	47.52
CDY19831	Canola	nucleus	33.57	46.68
Solyc03g081240.2.1	Tomato	nucleus	45.88	46.62
Bra036517.1-P	Field mustard	nucleus	33.43	46.48
CDX87123	Canola	nucleus	34.15	46.27
AT5G24470.1	Thale cress	cytosol, nucleus, plastid	37.34	46.24
CDX80448	Canola	nucleus	37.05	45.96
Bra009768.1-P	Field mustard	nucleus	37.19	45.65
PGSC0003DMT400001574	Potato	nucleus	43.27	43.78
CDX88107	Canola	plastid	37.19	36.93
KRG97248	Soybean	nucleus	36.47	36.79
KRH68964	Soybean	nucleus	36.32	36.27
Os09t0532400-01	Rice	nucleus	32.13	35.63
TraesCS5B01G320500.1	Wheat	nucleus	31.26	35.53
TraesCS5A01G320300.1	Wheat	nucleus	30.97	35.26
HORVU5Hr1G081620.4	Barley	nucleus	31.26	35.01
KRH06354	Soybean	nucleus	35.75	34.99
EER99234	Sorghum	nucleus	31.84	34.92
KRH47791	Soybean	nucleus	36.47	34.9
GSMUA_Achr9P24280_001	Banana	nucleus	32.13	33.23
Zm00001d006212_P002	Maize	nucleus	30.25	33.07
Zm00001d021291_P002	Maize	mitochondrion, plastid	31.26	31.81
TraesCS5D01G326200.3	Wheat	nucleus	28.65	31.78
GSMUA_Achr4P04970_001	Banana	nucleus	29.81	31.6
Zm00001d016258_P001	Maize	cytosol	8.83	29.47
GSMUA_Achr4P05170_001	Banana	nucleus	29.09	26.27
KRH19783	Soybean	nucleus	27.35	25.03
KRH32378	Soybean	nucleus	26.92	24.7
KRH56889	Soybean	nucleus	20.12	24.17
KRH63298	Soybean	nucleus	19.25	23.75
KRH03510	Soybean	nucleus	19.83	23.66
KRH54582	Soybean	nucleus	18.96	23.48
KRH24970	Soybean	cytosol, endoplasmic reticulum, nucleus	19.83	21.89
KRG88711	Soybean	nucleus	21.42	19.35

Protein Annotations

EntrezGene:100784383	MapMan:27.1.4	Gene3D:3.40.50.2300	EMBL:ACUP02002752	InterPro:CCT_domain	InterPro:CheY-like_superfamily
EnsemblPlantsGene:GLYMA_04G228300	GO:GO:0000160	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009987	UniProt:I1JYH9	InterPro:IPR001789	InterPro:IPR010402	EnsemblPlants:KRH64297	ProteinID:KRH64297
ProteinID:KRH64297.1	PFAM:PF00072	PFAM:PF06203	PFscan:PS50110	PFscan:PS51017	PANTHER:PTHR43874
PANTHER:PTHR43874:SF4	SMART:SM00448	SUPFAM:SSF52172	InterPro:Sig_transdc_resp-reg_receiver	UniParc:UPI00023BF948	:

Description

hypothetical protein

Coordinates

chr4:-:49758491..49762974

Molecular Weight (calculated)

76428.6 Da

IEP (calculated)

6.883

GRAVY (calculated)

-0.634

Length

691 amino acids

Sequence
(BLAST)

001: MGEVVIMSGE KKSVRVEGVE KEDSGGSGSK AGEFKGLMRW EKFLPKMVLR VLLVEADDST RQIIAALLRK CSYKVVAVPD GLKAWELLKG RPHNVDLILT
101: EVDLPSISGY ALLTLIMEHE ICKNIPVIMM SSQDSISTVY KCMLRGAADY LVKPIRKNEL RNLWQHVWRR QSSTTGINGL QDESVAQQKV EATAENNAAS
201: NRSSGDAACI QRNIELIEKG SDAQSSCTKP DCEAESDPVG NMQEFSLLKC GEAYPSGTET QQVETSFRLG QTLMMHDCHA GGLNVSIRKN GEASTTNDKD
301: TDTEHFGNAS ISGEAHDNPY VQINSSKEAM DLIGAFHTHP NCSLKNSTVN CTGNFDHSPQ LDLSLRRSCP GSFENKLTEE RHTLMHSNAS AFKRYTTRQL
401: QISMPAVLIN FSDQQREQIT NCEKNISHIA TGSNSDSSTP MQRCIVSPTT VQSKESELAT SHPPQGHSLP IPVKGVRFND LCTAYGSVLP SVFHTQSGPP
501: AMPSPNSVVL LEPNFQVNAF YQSNMKESSS EQLYESRGPN GNTTQNHIVY TQEHKSEHAE DRGHISPTTD QSVSSSFCNG NASHLNSIGY GSNCGSSSNV
601: DQVNTVWAAS EGKHEDLTNN ANSHRSIQRE AALNKFRLKR KERCYEKKVR YESRKKLAEQ RPRVKGQFVR QVHPDPLVAE KDGKEYDHSD F

Best Arabidopsis Sequence Match ( AT5G24470.1 )
(BLAST)

001: MTSSEEVVEV TVVKAPEAGG GKLSRRKIRK KDAGVDGLVK WERFLPKIAL RVLLVEADDS TRQIIAALLR KCSYRVAAVP DGLKAWEMLK GKPESVDLIL
101: TEVDLPSISG YALLTLIMEH DICKNIPVIM MSTQDSVNTV YKCMLKGAAD YLVKPLRRNE LRNLWQHVWR RQTSLAPDSF PWNESVGQQK AEGASANNSN
201: GKRDDHVVSG NGGDAQSSCT RPEMEGESAD VEVSARDAVQ MECAKSQFNE TRLLANELQS KQAEAIDFMG ASFRRTGRRN REESVAQYES RIELDLSLRR
301: PNASENQSSG DRPSLHPSSA SAFTRYVHRP LQTQCSASPV VTDQRKNVAA SQDDNIVLMN QYNTSEPPPN APRRNDTSFY TGADSPGPPF SNQLNSWPGQ
401: SSYPTPTPIN NIQFRDPNTA YTSAMAPASL SPSPSSVSPH EYSSMFHPFN SKPEGLQDRD CSMDVDERRY VSSATEHSAI GNHIDQLIEK KNEDGYSLSV
501: GKIQQSLQRE AALTKFRMKR KDRCYEKKVR YESRKKLAEQ RPRIKGQFVR QVQSTQAP

Arabidopsis Description

APRR5Two-component response regulator-like APRR5 [Source:UniProtKB/Swiss-Prot;Acc:Q6LA42]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.