Factsheet for Solyc03g081240.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g115770.2.1
Solyc06g069690.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24470.1	Solyc03g115770.2.1	AT5G61380.1	20407420
AT5G24470.1	Solyc06g069690.2.1	AT5G61380.1	20407420

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400001574	Potato	nucleus	90.88	90.48
Solyc03g081270.1.1	Tomato	plastid	33.53	89.76
CDY59590	Canola	nucleus	35.59	49.69
CDY05436	Canola	nucleus	36.32	48.91
VIT_16s0098g00900.t01	Wine grape	nucleus	49.41	48.84
Bra029407.1-P	Field mustard	nucleus	36.18	48.33
CDX87123	Canola	nucleus	35.44	47.25
AT5G24470.1	Thale cress	cytosol, nucleus, plastid	38.09	46.42
CDY19831	Canola	nucleus	33.82	46.28
Bra036517.1-P	Field mustard	nucleus	33.68	46.08
KRH64297	Soybean	nucleus	46.62	45.88
CDX80448	Canola	nucleus	37.5	45.78
Bra009768.1-P	Field mustard	nucleus	37.79	45.65
KRH53629	Soybean	nucleus	46.32	45.0
CDX88107	Canola	plastid	37.79	36.93
EER99234	Sorghum	nucleus	33.38	36.03
Zm00001d006212_P002	Maize	nucleus	32.65	35.13
TraesCS5A01G320300.1	Wheat	nucleus	31.32	35.09
Os09t0532400-01	Rice	nucleus	32.06	34.99
TraesCS5B01G320500.1	Wheat	nucleus	31.18	34.87
HORVU5Hr1G081620.4	Barley	nucleus	31.18	34.36
Zm00001d016258_P001	Maize	cytosol	10.29	33.82
Solyc10g005030.2.1	Tomato	nucleus	31.32	33.02
Zm00001d021291_P002	Maize	mitochondrion, plastid	32.35	32.4
GSMUA_Achr4P04970_001	Banana	nucleus	30.15	31.44
TraesCS5D01G326200.3	Wheat	nucleus	28.68	31.3
GSMUA_Achr9P24280_001	Banana	nucleus	29.41	29.94
GSMUA_Achr4P05170_001	Banana	nucleus	29.12	25.88
Solyc06g069690.2.1	Tomato	nucleus	18.09	24.5
Solyc03g115770.2.1	Tomato	nucleus	18.53	22.83
Solyc04g049670.2.1	Tomato	nucleus	20.74	22.27
Solyc10g086000.1.1	Tomato	nucleus	22.94	21.37

Protein Annotations

MapMan:27.1.4	Gene3D:3.40.50.12740	InterPro:CCT_domain	InterPro:CheY-like_superfamily	ncoils:Coil	GO:GO:0000160
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	InterPro:IPR001789
InterPro:IPR010402	UniProt:K4BI01	PFAM:PF00072	PFAM:PF06203	PFscan:PS50110	PFscan:PS51017
PANTHER:PTHR43874	PANTHER:PTHR43874:SF4	SMART:SM00448	SUPFAM:SSF52172	InterPro:Sig_transdc_resp-reg_receiver	EnsemblPlantsGene:Solyc03g081240.2
EnsemblPlants:Solyc03g081240.2.1	UniParc:UPI000276836D	SEG:seg	:	:	:

Description

Two-component response regulator-like APRR5 [Source:Projected from Arabidopsis thaliana (AT5G24470) UniProtKB/Swiss-Prot;Acc:Q6LA42]

Coordinates

chr3:-:52137874..52143426

Molecular Weight (calculated)

74565.8 Da

IEP (calculated)

6.712

GRAVY (calculated)

-0.712

Length

680 amino acids

Sequence
(BLAST)

001: MGEVVVSSEG DLEVIGGGDM VIETEAGGNM KETGAGAAVA AASSSILKWE RFLPKMVFRV LLVESDDSTR QIVAALLRKC SYRVAAVSDG LKAWELLKGR
101: PHNVDLILTE VDLPSISGYA LLSLIMEHDI CKNIPVIMMS SNDSVSTVYR CMLRGAADFL VKPVRKNELR NLWQHVWRRR AASGSSQGPV DESVAQQKVE
201: ATAENNACSN HSSGYKACVQ RNRECIEKGS DAQSSCTKPE LENEEENAEN LPESVQPNRE ASLPNAADLV KELLHEANNR LRISENDGRA PTTDANAMTR
301: GEDINSDDNW GHGRTIGQTS DEHPGPPTKQ AIDLIGAFDN YLKCNSKSSG SDTRINKGDS SPLLDLSLTR SHPSGSVNQF TNEKRRLNHS DTSAFTRYVN
401: RAMQSGQSTS SRTYNLQEYE TDSDKQLCGH AIDYNSDTRG PMTRPQSVAP PSYAEPGPAE IGFPSPQQRV TPLPISVRGI RFEGPSSAYC SMIAPILRMP
501: SGISPLQSPG SATPGESSYQ ANPFLALNCE SRSSQKFHSQ SDQNNSDSSA YNEGKRGHMS EPTTDCERFP SATDQTINSI CCNGDLNHVH LSYGSNGNIS
601: LPPGKTPAEY WKEESLHTTD GNSQRSQREA ALTKFRMKRK DRCFEKKVRY ESRKKLAEQR PRVKGQFVRH VPSESSPGNS

Best Arabidopsis Sequence Match ( AT5G24470.1 )
(BLAST)

001: MTSSEEVVEV TVVKAPEAGG GKLSRRKIRK KDAGVDGLVK WERFLPKIAL RVLLVEADDS TRQIIAALLR KCSYRVAAVP DGLKAWEMLK GKPESVDLIL
101: TEVDLPSISG YALLTLIMEH DICKNIPVIM MSTQDSVNTV YKCMLKGAAD YLVKPLRRNE LRNLWQHVWR RQTSLAPDSF PWNESVGQQK AEGASANNSN
201: GKRDDHVVSG NGGDAQSSCT RPEMEGESAD VEVSARDAVQ MECAKSQFNE TRLLANELQS KQAEAIDFMG ASFRRTGRRN REESVAQYES RIELDLSLRR
301: PNASENQSSG DRPSLHPSSA SAFTRYVHRP LQTQCSASPV VTDQRKNVAA SQDDNIVLMN QYNTSEPPPN APRRNDTSFY TGADSPGPPF SNQLNSWPGQ
401: SSYPTPTPIN NIQFRDPNTA YTSAMAPASL SPSPSSVSPH EYSSMFHPFN SKPEGLQDRD CSMDVDERRY VSSATEHSAI GNHIDQLIEK KNEDGYSLSV
501: GKIQQSLQRE AALTKFRMKR KDRCYEKKVR YESRKKLAEQ RPRIKGQFVR QVQSTQAP

Arabidopsis Description

APRR5Two-component response regulator-like APRR5 [Source:UniProtKB/Swiss-Prot;Acc:Q6LA42]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.