Factsheet for GSMUA_Achr4P04970_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P04570_001
GSMUA_Achr9P19550_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46790.1	GSMUA_Achr10P...	AT5G61380.1	20407420
AT2G46790.1	GSMUA_Achr2P04570_001	AT5G61380.1	20407420
AT2G46790.1	GSMUA_Achr9P19550_001	AT5G61380.1	20407420
AT5G24470.1	GSMUA_Achr10P...	AT5G61380.1	20407420
AT5G24470.1	GSMUA_Achr2P04570_001	AT5G61380.1	20407420
AT5G24470.1	GSMUA_Achr9P19550_001	AT5G61380.1	20407420

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P24280_001	Banana	nucleus	59.51	58.08
GSMUA_Achr4P05170_001	Banana	nucleus	61.66	52.55
Os09t0532400-01	Rice	nucleus	38.65	40.45
EER99234	Sorghum	nucleus	38.5	39.84
HORVU5Hr1G081620.4	Barley	nucleus	37.58	39.71
TraesCS5A01G320300.1	Wheat	nucleus	36.96	39.7
TraesCS5B01G320500.1	Wheat	nucleus	36.81	39.47
Zm00001d006212_P002	Maize	nucleus	37.88	39.08
Bra004507.1-P	Field mustard	nucleus	24.69	39.08
CDY41558	Canola	nucleus	24.69	39.08
Zm00001d016258_P001	Maize	cytosol	12.12	38.16
CDY59590	Canola	nucleus	27.91	37.37
CDX80047	Canola	nucleus	22.24	36.52
Zm00001d021291_P002	Maize	mitochondrion, plastid	37.42	35.94
TraesCS5D01G326200.3	Wheat	nucleus	34.2	35.79
CDY19831	Canola	nucleus	26.99	35.41
Bra036517.1-P	Field mustard	nucleus	26.99	35.41
CDY48015	Canola	nucleus	25.0	35.36
AT2G46790.1	Thale cress	nucleus	25.31	35.26
CDY05436	Canola	nucleus	27.3	35.25
Bra029407.1-P	Field mustard	nucleus	27.15	34.77
CDX87123	Canola	nucleus	26.69	34.12
VIT_15s0048g02540.t01	Wine grape	nucleus	32.98	33.54
AT5G24470.1	Thale cress	cytosol, nucleus, plastid	28.37	33.15
Bra009768.1-P	Field mustard	nucleus	27.76	32.15
CDX80448	Canola	nucleus	27.45	32.14
Solyc03g081240.2.1	Tomato	nucleus	31.44	30.15
VIT_16s0098g00900.t01	Wine grape	nucleus	31.75	30.09
KRH64297	Soybean	nucleus	31.6	29.81
KRG97248	Soybean	nucleus	31.14	29.64
PGSC0003DMT400029402	Potato	nucleus	28.83	29.38
KRH53629	Soybean	nucleus	31.44	29.29
KRH68964	Soybean	nucleus	30.83	29.05
Solyc10g005030.2.1	Tomato	nucleus	28.22	28.53
KRH06354	Soybean	nucleus	30.67	28.33
KRH47791	Soybean	nucleus	30.67	27.7
PGSC0003DMT400001574	Potato	nucleus	28.37	27.09
GSMUA_Achr9P08940_001	Banana	nucleus	27.3	27.05
CDX88107	Canola	plastid	27.91	26.15
GSMUA_Achr2P06760_001	Banana	nucleus	26.69	26.13
GSMUA_Achr8P01990_001	Banana	cytosol, nucleus, plastid	26.07	22.97
GSMUA_AchrUn_...	Banana	nucleus	26.23	22.32
GSMUA_Achr10P...	Banana	nucleus	17.64	21.22
GSMUA_Achr9P04240_001	Banana	nucleus	25.31	20.97
GSMUA_Achr9P19550_001	Banana	nucleus	16.87	20.87
GSMUA_Achr2P04570_001	Banana	nucleus	17.33	20.58
CDY27522	Canola	nucleus	25.15	19.05
Bra040484.1-P	Field mustard	cytosol	22.24	17.6

Protein Annotations

MapMan:27.1.4	Gene3D:3.40.50.12740	InterPro:CCT_domain	InterPro:CheY-like_superfamily	GO:GO:0000160	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr4G04970_001	EnsemblPlants:GSMUA_Achr4P04970_001
EnsemblPlants:GSMUA_Achr4T04970_001	InterPro:IPR001789	InterPro:IPR010402	UniProt:M0SL64	PFAM:PF00072	PFAM:PF06203
PFscan:PS50110	PFscan:PS51017	PANTHER:PTHR43874	PANTHER:PTHR43874:SF11	SMART:SM00448	SUPFAM:SSF52172
InterPro:Sig_transdc_resp-reg_receiver	UniParc:UPI000296299E	SEG:seg	:	:	:

Description

Putative Two-component response regulator-like PRR95 [Source:GMGC_GENE;Acc:GSMUA_Achr4G04970_001]

Coordinates

chr4:-:3882426..3889072

Molecular Weight (calculated)

72384.2 Da

IEP (calculated)

6.505

GRAVY (calculated)

-0.630

Length

652 amino acids

Sequence
(BLAST)

001: MGAREEREGR REEEEGAERF LPKMPVRVLL VEGDDSTRRI IAALLRKCGY RVAATSDGLK AWNTLKQKPQ TIDLVLSEVD LPSISGFGLL TMMMDHNTFK
101: SIPVIMMSSH DSTSMVFKCM LKGAADFLTK PLRKNELRNL WQHVWRRQIA SEQDDIHKIQ VNCDAKHKLT AQSGKEEHST ENLGIIQANK ECKEQMSDAQ
201: SSCTSSDVEA ESTQMELNQQ KLHAPTTLDD GKNIQFDNAS FASNENIDDT QNECLDPNSI TNATNGWQCH RDITSRDLVD LIQVIDNQPQ GVFQSGDSTT
301: VQSGFSDIAV HDVGVMCKSN TKPHLELCLK RFEGIFPEKL DCDGYNTWNH SSSSAFSLYN SRTVLPPLLI QKNSGSRSSG QNCTEPLLNY KDSSENMEET
401: KSPAVEPPVQ CTPLRVIPLP LPVGSMPLCS GYDTATQHMI YQPSGHHFWS TSSSSWMEGI IQTNSLNQPC QGIQNSMQGD LPDGNNSRSS SYHSAQNQEH
501: MELDEQRHVS SVAGESVGGI VCNGEGSHLN ISECSSVPDG TTGCTSTTNT LRPMTVRLTD QGKLTCEGTK PINCSMSQRE MALNKFRQKR KDRSFEKKVR
601: YHSRKLLAEQ RPRVKGQFVR HAKLYPQPTT LAAGGLPSQN VPQDLTNVAA LT

Best Arabidopsis Sequence Match ( AT5G24470.1 )
(BLAST)

001: MTSSEEVVEV TVVKAPEAGG GKLSRRKIRK KDAGVDGLVK WERFLPKIAL RVLLVEADDS TRQIIAALLR KCSYRVAAVP DGLKAWEMLK GKPESVDLIL
101: TEVDLPSISG YALLTLIMEH DICKNIPVIM MSTQDSVNTV YKCMLKGAAD YLVKPLRRNE LRNLWQHVWR RQTSLAPDSF PWNESVGQQK AEGASANNSN
201: GKRDDHVVSG NGGDAQSSCT RPEMEGESAD VEVSARDAVQ MECAKSQFNE TRLLANELQS KQAEAIDFMG ASFRRTGRRN REESVAQYES RIELDLSLRR
301: PNASENQSSG DRPSLHPSSA SAFTRYVHRP LQTQCSASPV VTDQRKNVAA SQDDNIVLMN QYNTSEPPPN APRRNDTSFY TGADSPGPPF SNQLNSWPGQ
401: SSYPTPTPIN NIQFRDPNTA YTSAMAPASL SPSPSSVSPH EYSSMFHPFN SKPEGLQDRD CSMDVDERRY VSSATEHSAI GNHIDQLIEK KNEDGYSLSV
501: GKIQQSLQRE AALTKFRMKR KDRCYEKKVR YESRKKLAEQ RPRIKGQFVR QVQSTQAP

Arabidopsis Description

APRR5Two-component response regulator-like APRR5 [Source:UniProtKB/Swiss-Prot;Acc:Q6LA42]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.