CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX87210
CDY02151
CDY64140

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46790.1	CDX87210	AT5G61380.1	20407420
AT2G46790.1	CDY02151	AT5G61380.1	20407420
AT2G46790.1	CDY64140	AT5G61380.1	20407420

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41558	Canola	nucleus	68.98	77.18
AT2G46790.1	Thale cress	nucleus	74.4	73.29
CDX80047	Canola	nucleus	62.69	72.8
Bra040484.1-P	Field mustard	cytosol	93.49	52.31
CDY27522	Canola	nucleus	95.01	50.87
CDY09224	Canola	nucleus	10.41	37.5
CDY59590	Canola	nucleus	37.53	35.52
CDY19831	Canola	nucleus	37.31	34.61
CDY05436	Canola	nucleus	37.53	34.26
CDX87123	Canola	nucleus	37.53	33.92
CDX80448	Canola	nucleus	38.61	31.96
CDX80201	Canola	nucleus	31.89	31.21
CDY31578	Canola	nucleus	32.97	30.96
HORVU5Hr1G081620.4	Barley	nucleus	35.57	26.58
TraesCS5A01G320300.1	Wheat	nucleus	34.92	26.52
TraesCS5B01G320500.1	Wheat	nucleus	34.92	26.48
Os09t0532400-01	Rice	nucleus	35.57	26.32
CDX88107	Canola	plastid	38.83	25.72
EER99234	Sorghum	nucleus	34.92	25.56
GSMUA_Achr9P24280_001	Banana	nucleus	36.66	25.3
Zm00001d006212_P002	Maize	nucleus	34.49	25.16
GSMUA_Achr4P04970_001	Banana	nucleus	35.36	25.0
TraesCS5D01G326200.3	Wheat	nucleus	32.1	23.76
Zm00001d021291_P002	Maize	mitochondrion, plastid	33.19	22.53
CDY04868	Canola	nucleus	32.75	21.79
CDY55688	Canola	nucleus	32.54	21.77
GSMUA_Achr4P05170_001	Banana	nucleus	36.01	21.7
CDY10422	Canola	nucleus	32.75	21.54
CDX70344	Canola	nucleus	32.75	21.45
CDX87210	Canola	nucleus	21.69	19.96
CDY02151	Canola	nucleus	21.91	18.46
Zm00001d016258_P001	Maize	cytosol	8.03	17.87
CDY64140	Canola	nucleus	22.13	17.8

Protein Annotations

MapMan:27.1.4	Gene3D:3.40.50.2300	GO:A0A078IAX9	UniProt:A0A078IAX9	InterPro:CCT_domain	EnsemblPlants:CDY48015
ProteinID:CDY48015	ProteinID:CDY48015.1	InterPro:CheY-like_superfamily	GO:GO:0000160	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00088661001	InterPro:IPR001789	InterPro:IPR010402
PFAM:PF00072	PFAM:PF06203	PFscan:PS50110	PFscan:PS51017	PANTHER:PTHR43874	PANTHER:PTHR43874:SF11
SMART:SM00448	SUPFAM:SSF52172	InterPro:Sig_transdc_resp-reg_receiver	UniParc:UPI0004EE9720	SEG:seg	:

Description

BnaA04g26750DBnaA04g26750D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IAX9]

Coordinates

chrLK032749:-:72176..74620

Molecular Weight (calculated)

51003.4 Da

IEP (calculated)

7.114

GRAVY (calculated)

-0.609

Length

461 amino acids

Sequence
(BLAST)

001: MGEVVVLSSD EGTMETMMSR GKSSEVVRWE KYLPTTVLRV LLVESDDSTR QIITALLQKC SYKVVAVSDG LAAWEILKEK THNIDLILTE LDLPAISGFA
101: LLALVMEHEA CKHIPVIMMS SQDSMTMVLK CMLRGAADYL IKPMRKNELK NLWQHVWRRL TLRGDLTANG PSLPASQQNV EENDETCADS RYHSDHGSGS
201: QAISDNGEDK LMGDVKPLFE SFDVTMDLIG GIDKRSECYY GDNAREQHVG PELGLSLKRS CSERSLEKNQ DESKHQKISL SDASAFSRYE NGKAGEKAVV
301: VAVEASSSAE PKTPSESHEK LFRCDHGSAT TSSNHENIGS SSVSGHNQFL QSGTTKQKQE SLFPVESNRP KASKEVEVGC QSTNEGTVTA GGQKEEGEGG
401: VTAQQRKSER EAALMKFRMK KKDRCFGKKV RYESRKKLAE QRPRVKGQFV RAVNSDASIT K

Best Arabidopsis Sequence Match ( AT2G46790.1 )
(BLAST)

001: MGEIVVLSSD DGMETIKNRV KSSEVVQWEK YLPKTVLRVL LVESDYSTRQ IITALLRKCC YKVVAVSDGL AAWEVLKEKS HNIDLILTEL DLPSISGFAL
101: LALVMEHEAC KNIPVIMMSS QDSIKMVLKC MLRGAADYLI KPMRKNELKN LWQHVWRRLT LRDDPTAHAQ SLPASQHNLE DTDETCEDSR YHSDQGSGAQ
201: AINYNGHNKL MENGKSVDER DEFKETFDVT MDLIGGIDKR PDSIYKDKSR DECVGPELGL SLKRSCSVSF ENQDESKHQK LSLSDASAFS RFEESKSAEK
301: AVVALEESTS GEPKTPTESH EKLRKVTSDQ GSATTSSNQE NIGSSSVSFR NQVLQSTVTN QKQDSPIPVE SNREKAASKE VEAGSQSTNE GIAGQSSSTE
401: KPKEEESAKQ RWSRSQREAA LMKFRLKRKD RCFDKKVRYQ SRKKLAEQRP RVKGQFVRTV NSDASTKS

Arabidopsis Description

APRR9Two-component response regulator-like APRR9 [Source:UniProtKB/Swiss-Prot;Acc:Q8L500]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.