Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra020263.1-P | Field mustard | nucleus | 91.41 | 95.12 |
| VIT_06s0004g03660.t01 | Wine grape | nucleus | 28.91 | 35.92 |
| AT2G46670.1 | Thale cress | nucleus | 40.62 | 28.42 |
| CDY31578 | Canola | nucleus | 71.88 | 18.74 |
| CDX80201 | Canola | nucleus | 67.97 | 18.47 |
| Solyc03g081270.1.1 | Tomato | plastid | 31.25 | 15.75 |
| CDY41558 | Canola | nucleus | 40.62 | 12.62 |
| CDY48015 | Canola | nucleus | 37.5 | 10.41 |
| CDY59590 | Canola | nucleus | 32.81 | 8.62 |
| CDY05436 | Canola | nucleus | 33.59 | 8.51 |
| CDX80047 | Canola | nucleus | 25.78 | 8.31 |
| CDY55688 | Canola | nucleus | 44.53 | 8.27 |
| CDY10422 | Canola | nucleus | 44.53 | 8.13 |
| CDX70344 | Canola | nucleus | 44.53 | 8.1 |
| CDY04868 | Canola | nucleus | 43.75 | 8.08 |
| CDX80448 | Canola | nucleus | 34.38 | 7.9 |
| CDY19831 | Canola | nucleus | 30.47 | 7.85 |
| CDX87123 | Canola | nucleus | 30.47 | 7.65 |
| CDX87210 | Canola | nucleus | 25.0 | 6.39 |
| CDX88107 | Canola | plastid | 34.38 | 6.32 |
| CDY27522 | Canola | nucleus | 40.62 | 6.04 |
| CDY02151 | Canola | nucleus | 25.78 | 6.03 |
| CDY64140 | Canola | nucleus | 25.78 | 5.76 |
Protein Annotations
| EnsemblPlants:CDY09224 | EnsemblPlantsGene:GSBRNA2T00001476001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | InterPro:CCT_domain | InterPro:IPR010402 | PANTHER:PTHR43874 |
| PANTHER:PTHR43874:SF11 | PFAM:PF06203 | PFscan:PS51017 | ProteinID:CDY09224 | ProteinID:CDY09224.1 | UniParc:UPI0004EE4D2F |
| UniProt:A0A078F859 | MapMan:35.1 | : | : | : | : |
Description
BnaA02g06500DBnaA02g06500D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F859]
Coordinates
chrLK031993:+:816321..817052
Molecular Weight (calculated)
14515.4 Da
IEP (calculated)
11.217
GRAVY (calculated)
-1.070
Length
128 amino acids
Sequence
(BLAST)
(BLAST)
001: MKKRPHMILY NNNGVASANK APEENVGSCS PGDSSVAKIM GSGLSSIDNP SNQQSSGSER ATQREAALMK FRLKRKERCF EKKVRYHSRR KLAEQRPRVK
101: GQFIRKRDDS NQEMSVRRLT TAESTKMV
101: GQFIRKRDDS NQEMSVRRLT TAESTKMV
001: MYLTCRFEES KSAEKAVVAL EESTSGEPKT PTESHEKLRK VRSDQGSSTT SSNQENIGSS SVSFRNQVLQ STVTNQKQDS PIPVESNREK AASKEVEAGS
101: QSTNEGIAGQ SSSTEKPKEE ESAKQRWSRS QREAALMKFR LKRKDRCFDK KVRYQSRKKL AEQRPRVKGQ FVRTVNSDAS TKS
101: QSTNEGIAGQ SSSTEKPKEE ESAKQRWSRS QREAALMKFR LKRKDRCFDK KVRYQSRKKL AEQRPRVKGQ FVRTVNSDAS TKS
Arabidopsis Description
CCT motif family protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV91]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.