CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73279
CDX79527
CDX80064
CDX80448
CDX83349
CDX84689
CDX86852
CDX87123
CDX88107
CDX93029
CDX99562
CDY05436
CDY15121
CDY17173
CDY19831
CDY23739
CDY37724
CDY50911
CDY59590
CDY66254
CDY67299

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G61380.1	CDX73279	AT1G33470.1	21798944
AT5G61380.1	CDX79527	AT2G33410.1	21798944
AT5G61380.1	CDX84689	AT2G33410.1	21798944
AT5G61380.1	CDY17173	AT2G33410.1	21798944
AT5G61380.1	CDY23739	AT2G33410.1	21798944
AT5G61380.1	CDY37724	AT2G33410.1	21798944
AT5G61380.1	CDY67299	AT2G33410.1	21798944
AT5G61380.1	CDX80064	AT2G46970.1	11828029
AT5G61380.1	CDX83349	AT2G46970.1	11828029
AT5G61380.1	CDY50911	AT2G46970.1	11828029
AT5G61380.1	CDY66254	AT2G46970.1	11828029
AT5G61380.1	CDX86852	AT3G16980.1	21798944
AT5G61380.1	CDX99562	AT3G16980.1	21798944
AT5G61380.1	CDX93029	AT3G24650.1	10743655
AT5G61380.1	CDY15121	AT3G24650.1	10743655
AT5G61380.1	CDX80448	AT5G24470.1	20407420
AT5G61380.1	CDX87123	AT5G24470.1	20407420
AT5G61380.1	CDX88107	AT5G24470.1	20407420
AT5G61380.1	CDY05436	AT5G24470.1	20407420
AT5G61380.1	CDY19831	AT5G24470.1	20407420
AT5G61380.1	CDY59590	AT5G24470.1	20407420

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02151	Canola	nucleus	92.5	96.89
CDX87210	Canola	nucleus	75.22	86.03
AT5G61380.1	Thale cress	nucleus	78.53	72.82
KRH54582	Soybean	nucleus	52.71	54.12
KRH63298	Soybean	nucleus	52.53	53.75
VIT_17s0000g06570.t01	Wine grape	nucleus	51.66	53.72
Solyc03g115770.2.1	Tomato	nucleus	50.44	52.36
KRH56889	Soybean	nucleus	52.18	52.0
PGSC0003DMT400050252	Potato	nucleus	49.91	51.91
KRH03510	Soybean	nucleus	52.18	51.64
Solyc06g069690.2.1	Tomato	nucleus	44.33	50.6
PGSC0003DMT400083086	Potato	nucleus	48.34	50.46
GSMUA_Achr9P19550_001	Banana	nucleus	38.92	42.31
GSMUA_Achr10P...	Banana	nucleus	39.79	42.07
Os02t0618200-01	Rice	nucleus	37.17	41.12
GSMUA_Achr2P04570_001	Banana	nucleus	39.27	40.98
TraesCS6B01G253900.1	Wheat	nucleus	36.13	40.12
HORVU6Hr1G057630.1	Barley	nucleus	36.13	39.66
Zm00001d017241_P002	Maize	nucleus	35.78	39.65
EES05438	Sorghum	nucleus	36.13	39.5
Zm00001d051114_P001	Maize	nucleus	36.3	38.1
TraesCS6A01G227900.2	Wheat	endoplasmic reticulum, plasma membrane, plastid	36.3	37.01
TraesCS6D01G207100.2	Wheat	endoplasmic reticulum, nucleus, plastid	36.3	36.75
Zm00001d003811_P001	Maize	cytosol	18.85	33.54
Zm00001d018818_P001	Maize	cytosol	16.93	31.91
Zm00001d043140_P001	Maize	cytosol	16.93	31.91
Zm00001d044406_P001	Maize	cytosol	16.23	30.59
CDY09224	Canola	nucleus	5.76	25.78
CDY41558	Canola	nucleus	17.28	24.03
CDY59590	Canola	nucleus	19.02	22.38
CDY19831	Canola	nucleus	19.37	22.33
CDY05436	Canola	nucleus	19.55	22.18
CDY48015	Canola	nucleus	17.8	22.13
Zm00001d005366_P001	Maize	cytosol	20.24	21.4
CDX80201	Canola	nucleus	17.45	21.23
CDY31578	Canola	nucleus	18.15	21.18
CDX80047	Canola	nucleus	14.66	21.16
CDX87123	Canola	nucleus	18.67	20.98
CDX80448	Canola	nucleus	19.72	20.29
CDY10422	Canola	nucleus	20.42	16.69
CDX70344	Canola	nucleus	20.24	16.48
CDY55688	Canola	nucleus	19.55	16.26
CDY04868	Canola	nucleus	19.55	16.16
CDX88107	Canola	plastid	19.55	16.09
CDY27522	Canola	nucleus	19.02	12.66

Protein Annotations

MapMan:27.1.3	Gene3D:3.40.50.2300	GO:A0A078JD60	UniProt:A0A078JD60	InterPro:CCT_domain	EnsemblPlants:CDY64140
ProteinID:CDY64140	ProteinID:CDY64140.1	InterPro:CheY-like_superfamily	GO:GO:0000160	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00040918001	InterPro:IPR001789	InterPro:IPR010402
PFAM:PF00072	PFAM:PF06203	PFscan:PS50110	PFscan:PS51017	PANTHER:PTHR43874	PANTHER:PTHR43874:SF35
SMART:SM00448	SUPFAM:SSF52172	InterPro:Sig_transdc_resp-reg_receiver	UniParc:UPI0004EDD810	SEG:seg	:

Description

BnaCnng43250DBnaCnng43250D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JD60]

Coordinates

chrLK034407:-:27663..30581

Molecular Weight (calculated)

64444.9 Da

IEP (calculated)

7.118

GRAVY (calculated)

-0.839

Length

573 amino acids

Sequence
(BLAST)

001: MDLNGECKGG GGDGFIDRSR VRILLCDNDP NSLGEVFTLL SQCSYQVTSV KSARQVIDAL NAEGPDIDII LAEIDLPMAK GMKMLRYITR DKDLRRIPVI
101: MMSRQDEVPV VVKCLKLGAA DYLVKPLRTN ELLNLWTHMW RRRRMLGLAE KNMLSYEFDL VGSDPSDPNT NSTNLFSDDT DDIRSTNPQR GSHQEKEWPV
201: ATGSVCASDG AADGTATSTP PVAVIEPPLN HLPEPHHEPT KRKTNPAQFS SVPKKSRLKI GESSAFFTYV KSTVNGNSSV HPGMAEKLQV VASEVNNNGK
301: QTRGGRETEK NKAQGENSVN GTLERSRTLP TPMELHGSRS YQEVPNSIER SRTLPPPMEL QGNRSCYQEG TMDDARVAAA KDSSQFAAQN AYPYYMHGVM
401: NQVMMQSAAM MPQYGHHQHP HFPPNHLNGM TGFPYYHHHP VNTSLQNGHV PLQNGQMPPM VHHHHSWPQV GNHPSPNEVR VTKLDRREEA LLKFRRKRNQ
501: RCFDKKIRYV NRKRLAERRP RVKGQFVRKM NGVNVDLNGQ PEPDSADYDD EEEEDEEEEE NRDSSPQDDA LGT

Best Arabidopsis Sequence Match ( AT5G61380.1 )
(BLAST)

001: MDLNGECKGG DGFIDRSRVR ILLCDNDSTS LGEVFTLLSE CSYQVTAVKS ARQVIDALNA EGPDIDIILA EIDLPMAKGM KMLRYITRDK DLRRIPVIMM
101: SRQDEVPVVV KCLKLGAADY LVKPLRTNEL LNLWTHMWRR RRMLGLAEKN MLSYDFDLVG SDQSDPNTNS TNLFSDDTDD RSLRSTNPQR GNLSHQENEW
201: SVATAPVHAR DGGLGADGTA TSSLAVTAIE PPLDHLAGSH HEPMKRNSNP AQFSSAPKKS RLKIGESSAF FTYVKSTVLR TNGQDPPLVD GNGSLHLHRG
301: LAEKFQVVAS EGINNTKQAR RATPKSTVLR TNGQDPPLVN GNGSHHLHRG AAEKFQVVAS EGINNTKQAH RSRGTEQYHS QGETLQNGAS YPHSLERSRT
401: LPTSMESHGR NYQEGNMNIP QVAMNRSKDS SQVDGSGFSA PNAYPYYMHG VMNQVMMQSA AMMPQYGHQI PHCQPNHPNG MTGYPYYHHP MNTSLQHSQM
501: SLQNGQMSMV HHSWSPAGNP PSNEVRVNKL DRREEALLKF RRKRNQRCFD KKIRYVNRKR LAERRPRVKG QFVRKMNGVN VDLNGQPDSA DYDDEEEEEE
601: EEEEENRDSS PQDDALGT

Arabidopsis Description

APRR1Two-component response regulator-like APRR1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LKL2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.