Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G33410.1 | CDY12358 | AT1G31750.1 | 21798944 |
| AT2G33410.1 | CDY27132 | AT1G31750.1 | 21798944 |
| AT2G33410.1 | CDY06428 | AT3G21215.1 | 21798944 |
| AT2G33410.1 | CDY27533 | AT3G21215.1 | 21798944 |
| AT2G33410.1 | CDY37307 | AT3G21215.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX84689 | Canola | nucleus | 96.8 | 96.32 |
| Bra022938.1-P | Field mustard | nucleus | 96.31 | 95.83 |
| CDY23739 | Canola | nucleus | 85.96 | 91.12 |
| AT2G33410.1 | Thale cress | nucleus | 90.64 | 91.09 |
| CDY67299 | Canola | nucleus | 84.98 | 90.55 |
| CDY17173 | Canola | nucleus | 82.76 | 89.12 |
| CDY37724 | Canola | nucleus | 70.69 | 88.85 |
| CDY12068 | Canola | nucleus | 56.16 | 63.69 |
| CDX90262 | Canola | nucleus | 57.14 | 60.73 |
| VIT_05s0049g01660.t01 | Wine grape | nucleus | 67.98 | 59.48 |
| KRH07772 | Soybean | cytosol | 13.79 | 57.14 |
| KRG92276 | Soybean | endoplasmic reticulum | 64.78 | 55.25 |
| KRH34534 | Soybean | nucleus | 64.04 | 55.2 |
| Solyc09g090520.2.1 | Tomato | nucleus | 64.53 | 55.16 |
| Solyc03g005680.2.1 | Tomato | nucleus | 57.88 | 55.04 |
| PGSC0003DMT400044195 | Potato | nucleus | 64.29 | 54.95 |
| PGSC0003DMT400035000 | Potato | nucleus | 59.11 | 54.3 |
| TraesCS1B01G168200.1 | Wheat | nucleus | 55.66 | 50.0 |
| KXG38359 | Sorghum | nucleus | 55.66 | 49.89 |
| TraesCS1A01G150600.1 | Wheat | nucleus | 55.66 | 49.78 |
| TraesCS1D01G147600.1 | Wheat | nucleus | 55.66 | 49.78 |
| Zm00001d032739_P001 | Maize | nucleus | 53.69 | 49.21 |
| GSMUA_Achr5P17690_001 | Banana | nucleus | 48.28 | 48.51 |
| Zm00001d014058_P002 | Maize | plastid | 53.94 | 45.44 |
| HORVU1Hr1G039790.1 | Barley | nucleus | 55.66 | 44.31 |
| CDY07975 | Canola | nucleus | 40.64 | 35.03 |
| CDY41059 | Canola | nucleus | 36.45 | 34.66 |
| CDX74030 | Canola | nucleus | 40.15 | 34.53 |
| CDY24201 | Canola | nucleus | 30.54 | 34.25 |
| CDY26229 | Canola | nucleus | 31.28 | 34.23 |
| CDY43360 | Canola | nucleus | 30.3 | 33.98 |
| CDY22136 | Canola | nucleus | 40.64 | 33.95 |
| CDY66272 | Canola | nucleus | 40.89 | 33.95 |
| CDY35966 | Canola | nucleus | 40.89 | 33.6 |
| CDY48318 | Canola | nucleus | 30.79 | 33.6 |
| CDX94301 | Canola | nucleus | 36.45 | 33.48 |
| CDY46690 | Canola | nucleus | 34.98 | 33.18 |
| CDY36753 | Canola | nucleus | 35.47 | 33.1 |
| CDY11989 | Canola | nucleus | 35.22 | 33.1 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 33.5 | 32.77 |
| CDY50131 | Canola | nucleus | 30.79 | 32.72 |
| CDX77783 | Canola | nucleus | 34.24 | 32.71 |
| CDX92807 | Canola | nucleus | 35.96 | 32.44 |
| CDX89316 | Canola | endoplasmic reticulum | 35.47 | 32.21 |
| CDY46689 | Canola | nucleus | 36.21 | 31.75 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 30.3 | 29.93 |
| CDY42061 | Canola | cytosol, nucleus, plastid | 26.11 | 29.2 |
| CDY45879 | Canola | cytosol, nucleus, plastid | 24.88 | 29.19 |
| CDY28918 | Canola | mitochondrion | 34.73 | 29.13 |
| CDY48851 | Canola | cytosol, nucleus, peroxisome | 25.62 | 28.57 |
| CDY44555 | Canola | cytosol, nucleus, plastid | 24.88 | 27.82 |
| CDX75170 | Canola | extracellular | 10.84 | 26.99 |
| CDY25957 | Canola | nucleus | 35.96 | 26.4 |
| CDY69852 | Canola | cytosol | 24.63 | 26.18 |
| CDY42724 | Canola | cytosol | 24.38 | 26.12 |
| CDY36357 | Canola | nucleus | 32.51 | 24.35 |
| CDY51790 | Canola | cytosol | 6.4 | 24.3 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 6.65 | 24.11 |
| CDY42577 | Canola | nucleus | 32.27 | 24.04 |
| CDX69279 | Canola | nucleus | 12.81 | 22.03 |
| CDY31859 | Canola | nucleus | 13.05 | 21.99 |
| CDX73279 | Canola | cytosol | 12.81 | 21.49 |
| CDY33653 | Canola | nucleus | 13.3 | 21.34 |
| CDY69197 | Canola | nucleus | 11.82 | 21.33 |
| CDY31508 | Canola | nucleus | 13.05 | 21.2 |
| CDY01349 | Canola | nucleus | 12.56 | 21.16 |
| CDY04769 | Canola | nucleus | 12.32 | 21.1 |
| CDY40554 | Canola | nucleus | 33.99 | 21.04 |
| CDX96615 | Canola | nucleus | 13.05 | 21.03 |
| CDX88283 | Canola | nucleus | 14.29 | 20.71 |
| CDY29496 | Canola | nucleus | 12.81 | 19.92 |
| CDY24106 | Canola | nucleus | 19.95 | 19.61 |
| CDY55846 | Canola | nucleus | 19.21 | 19.45 |
| CDY26001 | Canola | nucleus | 19.46 | 19.41 |
| CDY25759 | Canola | nucleus | 11.82 | 19.28 |
| CDY41556 | Canola | nucleus | 13.55 | 18.97 |
| CDY02889 | Canola | nucleus | 10.1 | 18.89 |
| CDY25867 | Canola | nucleus | 18.47 | 18.52 |
| CDX69277 | Canola | mitochondrion | 8.37 | 18.28 |
| CDX73451 | Canola | cytosol | 10.84 | 17.6 |
| CDY27523 | Canola | nucleus | 13.79 | 17.34 |
| CDX87594 | Canola | nucleus | 13.55 | 17.19 |
| CDY48016 | Canola | nucleus | 13.79 | 17.18 |
| CDX80046 | Canola | nucleus | 13.3 | 17.09 |
| CDY41557 | Canola | nucleus | 13.3 | 17.09 |
| CDY64698 | Canola | nucleus | 10.84 | 16.86 |
| CDX78261 | Canola | nucleus | 10.59 | 16.6 |
| CDX76950 | Canola | nucleus | 12.56 | 16.56 |
| CDY13782 | Canola | nucleus | 12.07 | 15.96 |
| CDX88432 | Canola | nucleus | 11.08 | 15.85 |
| CDX87460 | Canola | nucleus | 11.08 | 15.79 |
| CDY27186 | Canola | nucleus | 17.24 | 15.59 |
| CDY67263 | Canola | nucleus | 12.56 | 15.55 |
| CDX68024 | Canola | nucleus | 10.84 | 15.55 |
| CDX72106 | Canola | nucleus | 17.24 | 15.38 |
| CDY06947 | Canola | nucleus | 16.01 | 15.12 |
| CDX79253 | Canola | nucleus | 10.34 | 15.0 |
| CDY57580 | Canola | nucleus | 16.26 | 14.9 |
| CDY13339 | Canola | mitochondrion | 6.16 | 14.88 |
| CDY21356 | Canola | nucleus | 10.59 | 14.83 |
| CDY46642 | Canola | nucleus | 10.34 | 14.53 |
| CDY21399 | Canola | mitochondrion | 5.17 | 14.48 |
| CDY24657 | Canola | nucleus | 11.58 | 13.82 |
| CDX76015 | Canola | nucleus | 10.1 | 13.44 |
| CDY05301 | Canola | nucleus | 11.58 | 13.39 |
| CDX74070 | Canola | cytosol | 11.82 | 13.33 |
| CDY08023 | Canola | nucleus | 11.82 | 13.33 |
| CDY00446 | Canola | nucleus | 10.84 | 12.94 |
| CDY15850 | Canola | nucleus | 11.58 | 12.7 |
| CDY47382 | Canola | golgi, plastid | 11.82 | 11.54 |
Protein Annotations
| EnsemblPlants:CDX79527 | EnsemblPlantsGene:GSBRNA2T00132278001 | Gene3D:3.30.70.330 | GO:A0A078CS25 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR44291 | PFAM:PF00076 | PFscan:PS50102 | ProteinID:CDX79527 | ProteinID:CDX79527.1 | SEG:seg |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EF1F50 | MapMan:35.1 | : | : |
Description
BnaC03g18630D
Coordinates
chrLK031818:+:526539..528504
Molecular Weight (calculated)
41313.1 Da
IEP (calculated)
6.639
GRAVY (calculated)
-0.630
Length
406 amino acids
Sequence
(BLAST)
(BLAST)
001: MESDQGKLFI GGISWDTDEN LLKEYFANYG EVLQVTVMRE KATGRPRGFG FVAFSDPAVI DRVLQEKHHI DNRDVDVKRA MSREEQSPGG RPGGFNASRS
101: FDSGANVRTK KIFVGGLPPA LTSDEFRAYF ETYGPVSDAV IMIDQATQRP RGFGFVSFDS EDSVDLVLHK TFHDMNGKQV EVKRALPKDA NPGIAGGGGG
201: RGGSGGFPGY GGSGYEGGRV DSSNRYMQPQ NAGSGYPPYG ASGYGTGYGY GSNGVGYGGF GGYGNPAGAP YGNPAGVPGA GFGSGPRSSW GGQAPSGYGN
301: VGYGNAAAPW VGGSGPGSAV MGQGGGASAG YGSSQGYGYG GNDSSHGAPS GYGAVGGRPG SMPNSHSGGY ADGSDGSGGY GNLNHQGNGQ VGYGGGYGNG
401: RQAQQQ
101: FDSGANVRTK KIFVGGLPPA LTSDEFRAYF ETYGPVSDAV IMIDQATQRP RGFGFVSFDS EDSVDLVLHK TFHDMNGKQV EVKRALPKDA NPGIAGGGGG
201: RGGSGGFPGY GGSGYEGGRV DSSNRYMQPQ NAGSGYPPYG ASGYGTGYGY GSNGVGYGGF GGYGNPAGAP YGNPAGVPGA GFGSGPRSSW GGQAPSGYGN
301: VGYGNAAAPW VGGSGPGSAV MGQGGGASAG YGSSQGYGYG GNDSSHGAPS GYGAVGGRPG SMPNSHSGGY ADGSDGSGGY GNLNHQGNGQ VGYGGGYGNG
401: RQAQQQ
001: MESDQGKLFI GGISWDTDEN LLREYFSNFG EVLQVTVMRE KATGRPRGFG FVAFSDPAVI DRVLQDKHHI DNRDVDVKRA MSREEQSPAG RSGTFNASRN
101: FDSGANVRTK KIFVGGLPPA LTSDEFRAYF ETYGPVSDAV IMIDQTTQRP RGFGFVSFDS EDSVDLVLHK TFHDLNGKQV EVKRALPKDA NPGIASGGGR
201: GSGGAGGFPG YGGSGGSGYE GRVDSNRYMQ PQNTGSGYPP YGGSGYGTGY GYGSNGVGYG GFGGYGNPAG APYGNPSVPG AGFGSGPRSS WGAQAPSGYG
301: NVGYGNAAPW GGSGGPGSAV MGQAGASAGY GSQGYGYGGN DSSYGTPSAY GAVGGRSGNM PNNHGGGGYA DALDGSGGYG NHQGNNGQAG YGGGYGSGRQ
401: AQQQ
101: FDSGANVRTK KIFVGGLPPA LTSDEFRAYF ETYGPVSDAV IMIDQTTQRP RGFGFVSFDS EDSVDLVLHK TFHDLNGKQV EVKRALPKDA NPGIASGGGR
201: GSGGAGGFPG YGGSGGSGYE GRVDSNRYMQ PQNTGSGYPP YGGSGYGTGY GYGSNGVGYG GFGGYGNPAG APYGNPSVPG AGFGSGPRSS WGAQAPSGYG
301: NVGYGNAAPW GGSGGPGSAV MGQAGASAGY GSQGYGYGGN DSSYGTPSAY GAVGGRSGNM PNNHGGGGYA DALDGSGGYG NHQGNNGQAG YGGGYGSGRQ
401: AQQQ
Arabidopsis Description
Putative RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:O22791]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.