Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025568.1-P | Field mustard | nucleus | 99.08 | 99.08 |
| CDY36357 | Canola | nucleus | 97.98 | 98.52 |
| AT5G40490.1 | Thale cress | nucleus | 68.81 | 88.65 |
| VIT_14s0066g00480.t01 | Wine grape | nucleus | 46.42 | 67.29 |
| KRH07154 | Soybean | nucleus | 45.32 | 66.4 |
| KRG94084 | Soybean | nucleus | 44.77 | 65.24 |
| KRH56541 | Soybean | nucleus | 23.85 | 65.0 |
| KRG93213 | Soybean | nucleus | 43.85 | 63.4 |
| Solyc02g093340.2.1 | Tomato | nucleus | 43.67 | 61.18 |
| PGSC0003DMT400032811 | Potato | nucleus | 43.12 | 60.41 |
| CDY24201 | Canola | nucleus | 37.43 | 56.35 |
| CDY43360 | Canola | nucleus | 37.43 | 56.35 |
| CDY48318 | Canola | nucleus | 27.89 | 40.86 |
| CDY26229 | Canola | nucleus | 27.71 | 40.7 |
| CDY12068 | Canola | nucleus | 22.2 | 33.8 |
| CDX90262 | Canola | nucleus | 23.49 | 33.51 |
| CDY23739 | Canola | nucleus | 22.94 | 32.64 |
| CDY17173 | Canola | nucleus | 22.39 | 32.36 |
| CDX79527 | Canola | nucleus | 24.04 | 32.27 |
| CDX84689 | Canola | nucleus | 24.04 | 32.11 |
| CDY67299 | Canola | nucleus | 22.39 | 32.02 |
| CDY37724 | Canola | nucleus | 18.72 | 31.58 |
| CDY07975 | Canola | nucleus | 26.61 | 30.79 |
| CDX74030 | Canola | nucleus | 26.24 | 30.3 |
| CDY22136 | Canola | nucleus | 26.61 | 29.84 |
| CDY41059 | Canola | nucleus | 23.12 | 29.51 |
| CDY66272 | Canola | nucleus | 26.42 | 29.45 |
| CDX77783 | Canola | nucleus | 22.94 | 29.41 |
| CDY35966 | Canola | nucleus | 26.61 | 29.35 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 22.02 | 28.92 |
| CDY50131 | Canola | nucleus | 20.18 | 28.8 |
| CDX75170 | Canola | extracellular | 8.44 | 28.22 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 20.92 | 27.74 |
| CDX94301 | Canola | nucleus | 21.28 | 26.24 |
| CDY11989 | Canola | nucleus | 20.55 | 25.93 |
| CDY42061 | Canola | cytosol, nucleus, plastid | 17.06 | 25.62 |
| CDX92807 | Canola | nucleus | 20.92 | 25.33 |
| CDY48851 | Canola | cytosol, nucleus, peroxisome | 16.88 | 25.27 |
| CDY28918 | Canola | mitochondrion | 22.39 | 25.21 |
| CDY45879 | Canola | cytosol, nucleus, plastid | 15.96 | 25.14 |
| CDX89316 | Canola | endoplasmic reticulum | 20.55 | 25.06 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 5.14 | 25.0 |
| CDY46690 | Canola | nucleus | 19.63 | 25.0 |
| CDY46689 | Canola | nucleus | 20.92 | 24.62 |
| CDY36753 | Canola | nucleus | 19.63 | 24.6 |
| CDY51790 | Canola | cytosol | 4.77 | 24.3 |
| CDY44555 | Canola | cytosol, nucleus, plastid | 16.15 | 24.24 |
| CDY31859 | Canola | nucleus | 10.46 | 23.65 |
| CDY25957 | Canola | nucleus | 23.85 | 23.51 |
| CDY42724 | Canola | cytosol | 15.96 | 22.96 |
| CDY01349 | Canola | nucleus | 10.09 | 22.82 |
| CDY69852 | Canola | cytosol | 15.96 | 22.77 |
| CDY31508 | Canola | nucleus | 10.28 | 22.4 |
| CDX96615 | Canola | nucleus | 10.28 | 22.22 |
| CDY33653 | Canola | nucleus | 10.28 | 22.13 |
| CDY24106 | Canola | nucleus | 16.51 | 21.79 |
| CDY02889 | Canola | nucleus | 8.62 | 21.66 |
| CDX69279 | Canola | nucleus | 9.36 | 21.61 |
| CDX73451 | Canola | cytosol | 9.91 | 21.6 |
| CDY26001 | Canola | nucleus | 15.96 | 21.38 |
| CDY29496 | Canola | nucleus | 10.09 | 21.07 |
| CDY55846 | Canola | nucleus | 15.41 | 20.95 |
| CDX78261 | Canola | nucleus | 9.91 | 20.85 |
| CDY25867 | Canola | nucleus | 15.41 | 20.74 |
| CDX88283 | Canola | nucleus | 10.64 | 20.71 |
| CDY04769 | Canola | nucleus | 8.99 | 20.68 |
| CDY69197 | Canola | nucleus | 8.44 | 20.44 |
| CDY57580 | Canola | nucleus | 16.33 | 20.09 |
| CDY25759 | Canola | nucleus | 9.17 | 20.08 |
| CDY64698 | Canola | nucleus | 9.54 | 19.92 |
| CDX73279 | Canola | cytosol | 8.81 | 19.83 |
| CDY06947 | Canola | nucleus | 15.6 | 19.77 |
| CDX72106 | Canola | nucleus | 16.33 | 19.56 |
| CDY27186 | Canola | nucleus | 15.78 | 19.15 |
| CDX76015 | Canola | nucleus | 10.64 | 19.02 |
| CDY40554 | Canola | nucleus | 22.39 | 18.6 |
| CDX87594 | Canola | nucleus | 10.46 | 17.81 |
| CDX68024 | Canola | nucleus | 8.99 | 17.31 |
| CDY41556 | Canola | nucleus | 9.17 | 17.24 |
| CDX79253 | Canola | nucleus | 8.81 | 17.14 |
| CDX88432 | Canola | nucleus | 8.81 | 16.9 |
| CDX69277 | Canola | mitochondrion | 5.69 | 16.67 |
| CDX87460 | Canola | nucleus | 8.62 | 16.49 |
| CDX80046 | Canola | nucleus | 9.36 | 16.14 |
| CDY41557 | Canola | nucleus | 9.36 | 16.14 |
| CDY46642 | Canola | nucleus | 8.44 | 15.92 |
| CDX76950 | Canola | nucleus | 8.99 | 15.91 |
| CDY13782 | Canola | nucleus | 8.81 | 15.64 |
| CDY67263 | Canola | nucleus | 9.36 | 15.55 |
| CDY27523 | Canola | nucleus | 9.17 | 15.48 |
| CDY48016 | Canola | nucleus | 9.17 | 15.34 |
| CDY21356 | Canola | nucleus | 8.07 | 15.17 |
| CDY15850 | Canola | nucleus | 9.72 | 14.32 |
| CDY00446 | Canola | nucleus | 8.81 | 14.12 |
| CDY21399 | Canola | mitochondrion | 3.67 | 13.79 |
| CDY47382 | Canola | golgi, plastid | 10.28 | 13.46 |
| CDY13339 | Canola | mitochondrion | 4.04 | 13.1 |
| CDY08023 | Canola | nucleus | 7.89 | 11.94 |
| CDX74070 | Canola | cytosol | 7.52 | 11.39 |
| CDY05301 | Canola | nucleus | 6.97 | 10.83 |
| CDY24657 | Canola | nucleus | 6.61 | 10.59 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:A0A078HXL9 | UniProt:A0A078HXL9 | EnsemblPlants:CDY42577 | ProteinID:CDY42577 |
| ProteinID:CDY42577.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00075073001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PRINTS:PR01228 | PFscan:PS50102 |
| PANTHER:PTHR45276 | PANTHER:PTHR45276:SF2 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 |
| UniParc:UPI0004EE4A6D | SEG:seg | : | : | : | : |
Description
BnaA04g10360DBnaA04g10360D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HXL9]
Coordinates
chrLK032529:-:168508..171741
Molecular Weight (calculated)
56626.8 Da
IEP (calculated)
8.418
GRAVY (calculated)
-0.713
Length
545 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPYATETVV DEENHEVKPS EDVEDDDDKS QPQSGGGIDS AGKIFVGGLA RETTSAEFVK HFEKYGEITD SVIMKDRKTG QPRGFGFVTY ADSSVVDKLI
101: QDNHIINGKQ VEIKRTIPRG SMSSSNEIKT KKIFVGGIPS TVDDDEFKEF FMQFGELKEH QIMRDHATGR SRGFGFVTYE SEEMVDLLLA KGNRIELSGT
201: QVEIKKAEPK KPNSVTTPSR RFGDSRSNFG GGYGDGYGGG PGGGYGGPDG PYKSGGGYGG GRSGGYGGYG GEFGGYGGGG YGGGVGPYRG GEPPLGYSGR
301: YGGGGGGGYN RGGYSMGGGG GGGYGGGPGD MYGGPYGEPA GGYGGPSGSY GSGYGSGGYG GGGYRGSSGG YEMGGTGVGG GGGYPGGGGG GASGGGSFYG
401: GGGGGGGSRG GYGGGSGRYH PYGRIRHLEM ATLASNIVCI GKVERRRRLK IDCRKKEKGR DQSISPYKVI EITPPPKSLG VRCLPHNLQC GENVMIEGQT
501: YTISAVTHRY QLRKGKYEPS ERRLDVLSAA RYVLNLYFDN LLQNS
101: QDNHIINGKQ VEIKRTIPRG SMSSSNEIKT KKIFVGGIPS TVDDDEFKEF FMQFGELKEH QIMRDHATGR SRGFGFVTYE SEEMVDLLLA KGNRIELSGT
201: QVEIKKAEPK KPNSVTTPSR RFGDSRSNFG GGYGDGYGGG PGGGYGGPDG PYKSGGGYGG GRSGGYGGYG GEFGGYGGGG YGGGVGPYRG GEPPLGYSGR
301: YGGGGGGGYN RGGYSMGGGG GGGYGGGPGD MYGGPYGEPA GGYGGPSGSY GSGYGSGGYG GGGYRGSSGG YEMGGTGVGG GGGYPGGGGG GASGGGSFYG
401: GGGGGGGSRG GYGGGSGRYH PYGRIRHLEM ATLASNIVCI GKVERRRRLK IDCRKKEKGR DQSISPYKVI EITPPPKSLG VRCLPHNLQC GENVMIEGQT
501: YTISAVTHRY QLRKGKYEPS ERRLDVLSAA RYVLNLYFDN LLQNS
001: MDPYGTETVI EDEIHDPKPS EDIEDDDDKS QPHSGGGVDS AGKIFVGGLA RETTSAEFLK HFGKYGEITD SVIMKDRKTG QPRGFGFVTY ADSSVVDKVI
101: QDNHIIIGKQ VEIKRTIPRG SMSSNDFKTK KIFVGGIPSS VDDDEFKEFF MQFGELKEHQ IMRDHSTGRS RGFGFVTYES EDMVDHLLAK GNRIELSGTQ
201: VEIKKAEPKK PNSVTTPSKR FGDSRSNFGG GYGDGYGGGH GGGYGGPGGP YKSGGGYGGG RSGGYGGYGG EFGGYGGGGY GGGVGPYRGE PALGYSGRYG
301: GGGGGYNRGG YSMGGGGGYG GGPGDMYGGS YGEPGGGYGG PSGSYGGGYG SSGIGGYGGG MGGAGGGGYR GGGGYDMGGV GGGGAGGYGA GGGGNGGGSF
401: YGGGGGRGGY GGGGSGRYHP YGR
101: QDNHIIIGKQ VEIKRTIPRG SMSSNDFKTK KIFVGGIPSS VDDDEFKEFF MQFGELKEHQ IMRDHSTGRS RGFGFVTYES EDMVDHLLAK GNRIELSGTQ
201: VEIKKAEPKK PNSVTTPSKR FGDSRSNFGG GYGDGYGGGH GGGYGGPGGP YKSGGGYGGG RSGGYGGYGG EFGGYGGGGY GGGVGPYRGE PALGYSGRYG
301: GGGGGYNRGG YSMGGGGGYG GGPGDMYGGS YGEPGGGYGG PSGSYGGGYG SSGIGGYGGG MGGAGGGGYR GGGGYDMGGV GGGGAGGYGA GGGGNGGGSF
401: YGGGGGRGGY GGGGSGRYHP YGR
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9FM47]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.