Factsheet for VIT_14s0066g00480.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56541	Soybean	nucleus	40.16	75.5
KRH07154	Soybean	nucleus	74.2	75.0
KRG94084	Soybean	nucleus	73.4	73.8
KRG93213	Soybean	nucleus	71.81	71.62
VIT_19s0015g00920.t01	Wine grape	nucleus	61.44	66.38
Solyc02g093340.2.1	Tomato	nucleus	68.09	65.81
PGSC0003DMT400032811	Potato	nucleus	67.55	65.3
VIT_18s0117g00150.t01	Wine grape	nucleus	59.57	62.4
AT5G40490.1	Thale cress	nucleus	68.35	60.76
VIT_12s0057g01280.t01	Wine grape	nucleus	39.89	58.14
CDY36357	Canola	nucleus	67.82	47.05
Bra025568.1-P	Field mustard	nucleus	67.82	46.79
CDY42577	Canola	nucleus	67.29	46.42
VIT_09s0002g02350.t01	Wine grape	cytosol	37.77	40.23
VIT_07s0005g03980.t01	Wine grape	nucleus	35.64	30.88
VIT_05s0049g01660.t01	Wine grape	nucleus	38.03	30.82
VIT_12s0057g00480.t01	Wine grape	nucleus	37.23	29.29
VIT_19s0090g01660.t01	Wine grape	nucleus	36.44	28.66
VIT_07s0031g00600.t01	Wine grape	cytosol	25.0	26.18
VIT_18s0089g00920.t01	Wine grape	nucleus	15.16	21.19
VIT_18s0001g08640.t01	Wine grape	nucleus	25.8	20.59
VIT_08s0007g06300.t01	Wine grape	nucleus	18.62	20.47
VIT_18s0001g05840.t01	Wine grape	nucleus	14.89	20.29
VIT_18s0122g00660.t01	Wine grape	nucleus, plastid	15.16	20.0
VIT_13s0019g03610.t01	Wine grape	nucleus	13.03	19.84
VIT_15s0048g02630.t01	Wine grape	nucleus	13.3	18.73
VIT_19s0014g01570.t01	Wine grape	nucleus	22.07	18.49
VIT_07s0031g01290.t01	Wine grape	nucleus	17.29	16.58
VIT_08s0056g00690.t01	Wine grape	nucleus	20.21	16.41
VIT_06s0009g01190.t01	Wine grape	nucleus	17.55	14.44
VIT_16s0098g01050.t01	Wine grape	endoplasmic reticulum, extracellular	10.37	13.4
VIT_06s0009g01180.t01	Wine grape	mitochondrion, nucleus, plastid	17.29	12.55

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	ProteinID:CCB58466	ProteinID:CCB58466.1	UniProt:F6HUU8	EMBL:FN596252
GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0003730
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0006139	GO:GO:0006378	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009628
GO:GO:0009791	GO:GO:0009987	GO:GO:0048576	GO:GO:0048578	GO:GO:0097157	InterPro:IPR000504
InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR45276	PANTHER:PTHR45276:SF2
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI00015C9D94	ArrayExpress:VIT_14s0066g00480
EnsemblPlantsGene:VIT_14s0066g00480	EnsemblPlants:VIT_14s0066g00480.t01	unigene:Vvi.20816	SEG:seg	:	:

Description

No Description!

Coordinates

chr14:-:26972251..26977352

Molecular Weight (calculated)

38865.5 Da

IEP (calculated)

7.928

GRAVY (calculated)

-0.693

Length

376 amino acids

Sequence
(BLAST)

001: MDSQPTEAIL DGETNDVKSS HHTDDNDSKP HPHTGDGASP GKIFIGGLAR ETTSAQFIKH FGKYGEITDS VIMKDRKTGQ PRGFGFVTYA DLSVVDQVIQ
101: DTHVINGKQV EIKRTIPKGA IGAKDFKTKK IFVGGIPATV TEEEFKDFFT QYGEVKDHQI MRDHSTSRSR GFGFVTFDTE QAVDDLLSQG NKLELAGAQV
201: EIKKAEPKKP NPPVPPSRRY SDSRPGFGGG FGDAYAGFGG SSFGNGPYRS GGAYGSRASA YAGYGGSEFG GYGGYGGGGS SGGGGGIGTY RGEPPSLGYS
301: GRYGGSFNRG YDLGGSHGGP SEGYGAYGGG AGSGYGGGYD ASIGGGYGGS SGGPFYGSRG GYGGGGSSGR YHPYGR

Best Arabidopsis Sequence Match ( AT5G40490.1 )
(BLAST)

001: MDPYGTETVI EDEIHDPKPS EDIEDDDDKS QPHSGGGVDS AGKIFVGGLA RETTSAEFLK HFGKYGEITD SVIMKDRKTG QPRGFGFVTY ADSSVVDKVI
101: QDNHIIIGKQ VEIKRTIPRG SMSSNDFKTK KIFVGGIPSS VDDDEFKEFF MQFGELKEHQ IMRDHSTGRS RGFGFVTYES EDMVDHLLAK GNRIELSGTQ
201: VEIKKAEPKK PNSVTTPSKR FGDSRSNFGG GYGDGYGGGH GGGYGGPGGP YKSGGGYGGG RSGGYGGYGG EFGGYGGGGY GGGVGPYRGE PALGYSGRYG
301: GGGGGYNRGG YSMGGGGGYG GGPGDMYGGS YGEPGGGYGG PSGSYGGGYG SSGIGGYGGG MGGAGGGGYR GGGGYDMGGV GGGGAGGYGA GGGGNGGGSF
401: YGGGGGRGGY GGGGSGRYHP YGR

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9FM47]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.