Factsheet for VIT_19s0015g00920.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0117g00150.t01	Wine grape	nucleus	87.07	84.4
AT3G13224.2	Thale cress	nucleus	74.71	72.63
CDY24201	Canola	nucleus	74.71	71.82
Bra039380.1-P	Field mustard	nucleus	74.14	71.27
CDY43360	Canola	nucleus	74.14	71.27
GSMUA_AchrUn_...	Banana	cytosol	62.07	65.65
VIT_12s0057g01280.t01	Wine grape	nucleus	48.56	65.5
GSMUA_Achr1P19260_001	Banana	nucleus	63.22	65.09
GSMUA_Achr1P09440_001	Banana	cytosol	62.93	64.6
Os08t0320100-01	Rice	nucleus	64.37	64.0
EES01076	Sorghum	nucleus	63.51	63.32
Zm00001d030579_P001	Maize	mitochondrion	61.49	61.49
VIT_14s0066g00480.t01	Wine grape	nucleus	66.38	61.44
TraesCS6D01G272500.1	Wheat	nucleus	58.33	58.5
TraesCS6A01G291100.1	Wheat	nucleus	56.32	57.48
GSMUA_Achr8P25380_001	Banana	nucleus	62.36	57.26
HORVU7Hr1G060930.1	Barley	plasma membrane	57.18	56.21
TraesCS7A01G282600.1	Wheat	cytosol	56.32	56.0
TraesCS7B01G178300.1	Wheat	nucleus	57.18	55.9
TraesCS7D01G281300.1	Wheat	nucleus	56.61	55.49
GSMUA_Achr9P12880_001	Banana	cytosol	36.21	54.78
Zm00001d052820_P001	Maize	extracellular, mitochondrion, plasma membrane	59.77	54.31
TraesCS6B01G321300.2	Wheat	nucleus	58.05	54.16
OQU81002	Sorghum	nucleus	45.69	47.46
VIT_09s0002g02350.t01	Wine grape	cytosol	39.94	39.38
Os08t0492100-02	Rice	nucleus	41.95	33.49
VIT_12s0057g00480.t01	Wine grape	nucleus	41.09	29.92
VIT_07s0005g03980.t01	Wine grape	nucleus	37.07	29.72
VIT_19s0090g01660.t01	Wine grape	nucleus	38.79	28.24
VIT_05s0049g01660.t01	Wine grape	nucleus	37.64	28.23
VIT_07s0031g00600.t01	Wine grape	cytosol	23.85	23.12
VIT_18s0089g00920.t01	Wine grape	nucleus	16.95	21.93
VIT_18s0001g08640.t01	Wine grape	nucleus	27.87	20.59
VIT_13s0019g03610.t01	Wine grape	nucleus	14.37	20.24
VIT_15s0048g02630.t01	Wine grape	nucleus	15.23	19.85
VIT_18s0001g05840.t01	Wine grape	nucleus	15.52	19.57
VIT_08s0007g06300.t01	Wine grape	nucleus	18.97	19.3
VIT_18s0122g00660.t01	Wine grape	nucleus, plastid	15.8	19.3
VIT_19s0014g01570.t01	Wine grape	nucleus	24.43	18.93
VIT_08s0056g00690.t01	Wine grape	nucleus	22.41	16.85
VIT_07s0031g01290.t01	Wine grape	nucleus	18.68	16.58
VIT_06s0009g01180.t01	Wine grape	mitochondrion, nucleus, plastid	20.69	13.9
VIT_16s0098g01050.t01	Wine grape	endoplasmic reticulum, extracellular	11.49	13.75
VIT_06s0009g01190.t01	Wine grape	nucleus	16.95	12.91

Protein Annotations

EntrezGene:100265210	wikigene:100265210	Gene3D:3.30.70.330	MapMan:35.1	UniProt:A5APB9	EMBL:AM431355
ProteinID:CAN78130	ProteinID:CAN78130.1	ProteinID:CCB62032	ProteinID:CCB62032.1	EMBL:FN596747	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677
EntrezGene:LOC100265210	wikigene:LOC100265210	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR45276
PANTHER:PTHR45276:SF1	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	TIGR:TC61281
TIGR:TC62276	UniParc:UPI000151EFF7	ArrayExpress:VIT_19s0015g00920	EnsemblPlantsGene:VIT_19s0015g00920	EnsemblPlants:VIT_19s0015g00920.t01	unigene:Vvi.1187
RefSeq:XP_002271592	RefSeq:XP_002271592.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr19:-:9026555..9029900

Molecular Weight (calculated)

36180.6 Da

IEP (calculated)

9.503

GRAVY (calculated)

-0.634

Length

348 amino acids

Sequence
(BLAST)

001: MGSKSKSDNP HTGDGASPGK IFIGGLAKDT TYATFNKHFG KYGDITDSVI MKDRYTGQPR GFGFITYADP SVVDRVIEDT HVINGKQVEI KRTIPKGSGQ
101: SKDFKTKKIF VGGVPSTVTE DEFKNFFSKY GKVVEHQIIR DHETNRSRGF GFIIFDSEEV VDEMISKGNM IDMAGTQVEI KKAEPKKASN PPPAPAYGSN
201: SRARSFSDGF GGFGSSYGGF DSGFGPGPYR TPGGVGGRLG GYGGYGSSGS EFGGGYGGFG SSSLGGYRGE SSLGYSSRFG PYGGGFSGGY GGSGLGGYGR
301: GGEGYGNYGG SGYSGGYDSG PGASYGGAGG LYGRGGYSGS SRYHPYAR

Best Arabidopsis Sequence Match ( AT3G13224.2 )
(BLAST)

001: MGSRSRNDNF QSGDGASPGK IFIGGLHKDT TNTVFNKHFG KYGEITDSVI MRDRHTGQPR GFGFITFADP SVVDKVIEDT HVINGKQVEI KRTIPKGAGG
101: NQSKDIKTKK IFVGGIPSTV TEDELKDFFA KYGNVVEHQV IRDHETNRSR GFGFVIFDSE EVVDELLSKG NMIDMADTQV EIKKAEPKKS LNRSPPSYGS
201: HPRGRSSNDS YASYGGPYGG FDGGYGHPPG PIRSHGGPAS RYAGGYGYGR GSVGPEFGGG YNNYGGGSLG GYRNEPPLGY SSRFGPYGSG FGGEGYGRGG
301: EGAYLGYPRG GGEGYGGYGG PGYGGAYESG GPGGSYEGAG GPYGRGYSSS SRYHPYAR

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LHL2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.