Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
mitochondrion:
27297264
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES01076 | Sorghum | nucleus | 93.97 | 93.7 |
| Os08t0320100-01 | Rice | nucleus | 85.06 | 84.57 |
| TraesCS6D01G272500.1 | Wheat | nucleus | 74.71 | 74.93 |
| TraesCS6A01G291100.1 | Wheat | nucleus | 72.41 | 73.9 |
| TraesCS6B01G321300.2 | Wheat | nucleus | 75.0 | 69.97 |
| GSMUA_Achr1P19260_001 | Banana | nucleus | 64.66 | 66.57 |
| GSMUA_AchrUn_... | Banana | cytosol | 62.64 | 66.26 |
| GSMUA_Achr1P09440_001 | Banana | cytosol | 62.93 | 64.6 |
| VIT_19s0015g00920.t01 | Wine grape | nucleus | 61.49 | 61.49 |
| PGSC0003DMT400044868 | Potato | nucleus | 58.91 | 59.94 |
| GSMUA_Achr8P25380_001 | Banana | nucleus | 64.37 | 59.1 |
| Solyc07g045240.2.1 | Tomato | nucleus | 57.76 | 58.6 |
| VIT_18s0117g00150.t01 | Wine grape | nucleus | 59.77 | 57.94 |
| KRH17717 | Soybean | nucleus | 57.47 | 56.82 |
| VIT_12s0057g01280.t01 | Wine grape | nucleus | 40.8 | 55.04 |
| AT3G13224.2 | Thale cress | nucleus | 56.03 | 54.47 |
| CDY24201 | Canola | nucleus | 56.03 | 53.87 |
| Bra039380.1-P | Field mustard | nucleus | 55.46 | 53.31 |
| CDY43360 | Canola | nucleus | 55.46 | 53.31 |
| Zm00001d052820_P001 | Maize | extracellular, mitochondrion, plasma membrane | 54.31 | 49.35 |
| Zm00001d036966_P001 | Maize | nucleus, plasma membrane | 47.99 | 40.44 |
| Zm00001d046190_P001 | Maize | extracellular | 48.56 | 40.43 |
| Zm00001d016349_P002 | Maize | nucleus | 43.97 | 39.84 |
| PGSC0003DMT400044866 | Potato | extracellular | 58.62 | 38.2 |
| Solyc12g035280.1.1 | Tomato | cytosol, nucleus, plastid | 33.05 | 31.0 |
| Zm00001d034200_P001 | Maize | nucleus | 14.37 | 29.24 |
| Zm00001d053572_P002 | Maize | cytosol | 43.97 | 27.87 |
| Zm00001d034201_P001 | Maize | nucleus | 19.54 | 27.09 |
| Zm00001d032739_P001 | Maize | nucleus | 34.48 | 27.09 |
| Zm00001d019079_P001 | Maize | cytosol | 32.76 | 25.45 |
| Zm00001d007839_P001 | Maize | cytosol | 27.01 | 25.41 |
| Zm00001d007772_P001 | Maize | nucleus | 32.18 | 24.94 |
| Zm00001d014058_P002 | Maize | plastid | 33.91 | 24.48 |
| Zm00001d019084_P002 | Maize | nucleus | 31.32 | 24.01 |
| Zm00001d006704_P002 | Maize | nucleus | 32.76 | 23.55 |
| Zm00001d011885_P008 | Maize | cytosol | 24.14 | 23.33 |
| Zm00001d018730_P001 | Maize | nucleus | 23.85 | 22.19 |
| Zm00001d052212_P001 | Maize | nucleus | 10.06 | 21.74 |
| Zm00001d019086_P001 | Maize | nucleus | 33.05 | 21.62 |
| Zm00001d021950_P007 | Maize | endoplasmic reticulum, nucleus | 32.18 | 20.7 |
| Zm00001d036789_P001 | Maize | cytosol, mitochondrion, nucleus | 14.66 | 18.28 |
| Zm00001d042641_P001 | Maize | nucleus | 15.23 | 17.97 |
| Zm00001d047753_P001 | Maize | cytosol, mitochondrion, nucleus | 13.22 | 16.49 |
| Zm00001d011336_P002 | Maize | nucleus | 20.98 | 16.29 |
| Zm00001d040344_P001 | Maize | extracellular, plasma membrane | 20.98 | 16.08 |
| Zm00001d042133_P003 | Maize | cytosol | 18.1 | 15.83 |
| Zm00001d044469_P003 | Maize | nucleus | 20.11 | 15.66 |
| Zm00001d012238_P003 | Maize | nucleus, plasma membrane, plastid | 15.23 | 15.59 |
| Zm00001d028714_P001 | Maize | cytosol, nucleus, plasma membrane | 13.22 | 15.49 |
| Zm00001d018103_P002 | Maize | plasma membrane | 14.08 | 15.41 |
| Zm00001d042042_P001 | Maize | nucleus | 14.94 | 15.29 |
| Zm00001d046716_P001 | Maize | nucleus | 14.66 | 14.17 |
| Zm00001d037209_P001 | Maize | plastid | 13.51 | 14.16 |
| Zm00001d017829_P002 | Maize | plastid | 13.22 | 13.33 |
| Zm00001d051627_P002 | Maize | plastid | 12.36 | 11.68 |
| Zm00001d002141_P006 | Maize | nucleus | 16.67 | 11.13 |
| Zm00001d026397_P001 | Maize | nucleus, plasma membrane | 15.8 | 10.56 |
Protein Annotations
| EntrezGene:103639292 | Gene3D:3.30.70.330 | MapMan:35.1 | UniProt:A0A1D6KD20 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | ProteinID:ONM01134.1 |
| PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR45276 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI000220DC7D | EnsemblPlantsGene:Zm00001d030579 | EnsemblPlants:Zm00001d030579_P001 | EnsemblPlants:Zm00001d030579_T001 | SEG:seg |
Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Coordinates
chr1:+:145820512..145824791
Molecular Weight (calculated)
37252.3 Da
IEP (calculated)
9.471
GRAVY (calculated)
-0.629
Length
348 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGKMKELDG ASPAKIFIGG LSKDTSMSTF KEHFGKYGDI IDAVIMKDRY TQKPRGFGFI TFADPTVVDR VIEDEHVING KPVEIKRTIP KGAAPLKDFK
101: TKKIFVGGLP SALKEDEFKE FFSKFGKVVE HEIIRDHATN RSRGFGFIVF DAEKAVDDLL HKKGNMIDLN GSQVEIKKAE PKKPSNQPPR SLDSEPRGRP
201: YADSYDGFGS SYNYGGSFGP YRSPRSFGAR PSSYSSAYGP GDYGSGYATY GGALVGYREP SLYSSRYGST YGGSLGGGYG GVSYDGGLAG AYERDAGGYG
301: GSSYGRSYDS SWANTGDGFG TGGLYGARTG YGGSGGSGAA GRYHPYGR
101: TKKIFVGGLP SALKEDEFKE FFSKFGKVVE HEIIRDHATN RSRGFGFIVF DAEKAVDDLL HKKGNMIDLN GSQVEIKKAE PKKPSNQPPR SLDSEPRGRP
201: YADSYDGFGS SYNYGGSFGP YRSPRSFGAR PSSYSSAYGP GDYGSGYATY GGALVGYREP SLYSSRYGST YGGSLGGGYG GVSYDGGLAG AYERDAGGYG
301: GSSYGRSYDS SWANTGDGFG TGGLYGARTG YGGSGGSGAA GRYHPYGR
001: MGSRSRNDNF QSGDGASPGK IFIGGLHKDT TNTVFNKHFG KYGEITDSVI MRDRHTGQPR GFGFITFADP SVVDKVIEDT HVINGKQVEI KRTIPKGAGG
101: NQSKDIKTKK IFVGGIPSTV TEDELKDFFA KYGNVVEHQV IRDHETNRSR GFGFVIFDSE EVVDELLSKG NMIDMADTQV EIKKAEPKKS LNRSPPSYGS
201: HPRGRSSNDS YASYGGPYGG FDGGYGHPPG PIRSHGGPAS RYAGGYGYGR GSVGPEFGGG YNNYGGGSLG GYRNEPPLGY SSRFGPYGSG FGGEGYGRGG
301: EGAYLGYPRG GGEGYGGYGG PGYGGAYESG GPGGSYEGAG GPYGRGYSSS SRYHPYAR
101: NQSKDIKTKK IFVGGIPSTV TEDELKDFFA KYGNVVEHQV IRDHETNRSR GFGFVIFDSE EVVDELLSKG NMIDMADTQV EIKKAEPKKS LNRSPPSYGS
201: HPRGRSSNDS YASYGGPYGG FDGGYGHPPG PIRSHGGPAS RYAGGYGYGR GSVGPEFGGG YNNYGGGSLG GYRNEPPLGY SSRFGPYGSG FGGEGYGRGG
301: EGAYLGYPRG GGEGYGGYGG PGYGGAYESG GPGGSYEGAG GPYGRGYSSS SRYHPYAR
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LHL2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.