Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 1
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER90058 | Sorghum | plastid | 94.27 | 91.96 |
| Os06t0622900-01 | Rice | cytosol, mitochondrion, nucleus | 82.8 | 84.0 |
| TraesCS7A01G398200.1 | Wheat | cytosol, mitochondrion, nucleus | 84.23 | 83.04 |
| TraesCS7B01G299000.1 | Wheat | mitochondrion, nucleus, plastid | 83.87 | 82.11 |
| TraesCS7D01G392500.1 | Wheat | cytosol, nucleus, plastid | 83.15 | 80.84 |
| HORVU7Hr1G093450.6 | Barley | nucleus | 76.34 | 72.45 |
| Zm00001d046716_P001 | Maize | nucleus | 85.66 | 66.39 |
| AT5G53720.1 | Thale cress | cytosol | 17.56 | 49.0 |
| GSMUA_Achr9P14920_001 | Banana | plastid | 29.75 | 46.89 |
| CDY51790 | Canola | cytosol | 17.56 | 45.79 |
| PGSC0003DMT400025900 | Potato | nucleus | 46.95 | 45.64 |
| Zm00001d052212_P001 | Maize | nucleus | 25.45 | 44.1 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 17.56 | 43.75 |
| GSMUA_Achr3P06540_001 | Banana | nucleus, plastid | 24.73 | 43.4 |
| Solyc04g082770.2.1 | Tomato | cytosol, extracellular, nucleus, plastid | 36.92 | 42.74 |
| KRH53608 | Soybean | nucleus | 31.9 | 36.18 |
| AT5G53680.1 | Thale cress | cytosol | 21.86 | 36.09 |
| GSMUA_Achr8P23460_001 | Banana | nucleus | 30.47 | 36.02 |
| GSMUA_Achr5P05400_001 | Banana | mitochondrion | 34.05 | 35.98 |
| Zm00001d042641_P001 | Maize | nucleus | 37.99 | 35.93 |
| KRH64318 | Soybean | nucleus | 32.26 | 35.02 |
| AT5G11412.1 | Thale cress | endoplasmic reticulum | 20.79 | 33.14 |
| Zm00001d047753_P001 | Maize | cytosol, mitochondrion, nucleus | 31.9 | 31.9 |
| Zm00001d037209_P001 | Maize | plastid | 36.92 | 31.02 |
| Zm00001d017829_P002 | Maize | plastid | 38.35 | 31.01 |
| Zm00001d042042_P001 | Maize | nucleus | 37.63 | 30.88 |
| Zm00001d012238_P003 | Maize | nucleus, plasma membrane, plastid | 37.28 | 30.59 |
| Zm00001d018103_P002 | Maize | plasma membrane | 34.77 | 30.5 |
| Zm00001d028714_P001 | Maize | cytosol, nucleus, plasma membrane | 32.26 | 30.3 |
| Zm00001d051627_P002 | Maize | plastid | 38.71 | 29.35 |
| Bra029612.1-P | Field mustard | nucleus | 17.92 | 17.42 |
| AT3G06970.1 | Thale cress | nucleus | 18.64 | 16.4 |
| CDY05301 | Canola | nucleus | 19.0 | 15.1 |
| CDY24657 | Canola | nucleus | 18.28 | 15.0 |
| Zm00001d044469_P003 | Maize | nucleus | 24.01 | 14.99 |
| Zm00001d016349_P002 | Maize | nucleus | 20.43 | 14.84 |
| Zm00001d030579_P001 | Maize | mitochondrion | 18.28 | 14.66 |
| Zm00001d036966_P001 | Maize | nucleus, plasma membrane | 21.15 | 14.29 |
| Zm00001d011336_P002 | Maize | nucleus | 22.94 | 14.29 |
| CDY08023 | Canola | nucleus | 18.28 | 14.17 |
| Zm00001d046190_P001 | Maize | extracellular | 21.15 | 14.11 |
| CDX74070 | Canola | cytosol | 17.92 | 13.89 |
| Bra001228.1-P | Field mustard | cytosol | 17.56 | 13.54 |
| Zm00001d032739_P001 | Maize | nucleus | 20.43 | 12.87 |
| Zm00001d034201_P001 | Maize | nucleus | 11.47 | 12.75 |
| Zm00001d007839_P001 | Maize | cytosol | 16.85 | 12.7 |
| Zm00001d011885_P008 | Maize | cytosol | 16.13 | 12.5 |
| Zm00001d034200_P001 | Maize | nucleus | 7.53 | 12.28 |
| Zm00001d014058_P002 | Maize | plastid | 20.43 | 11.83 |
| Zm00001d052820_P001 | Maize | extracellular, mitochondrion, plasma membrane | 16.13 | 11.75 |
| Zm00001d019079_P001 | Maize | cytosol | 18.64 | 11.61 |
| Zm00001d007772_P001 | Maize | nucleus | 17.92 | 11.14 |
| Zm00001d019084_P002 | Maize | nucleus | 17.92 | 11.01 |
| Zm00001d040344_P001 | Maize | extracellular, plasma membrane | 17.56 | 10.79 |
| Zm00001d018730_P001 | Maize | nucleus | 14.34 | 10.7 |
| Zm00001d006704_P002 | Maize | nucleus | 18.28 | 10.54 |
| Zm00001d053572_P002 | Maize | cytosol | 20.43 | 10.38 |
| Zm00001d002141_P006 | Maize | nucleus | 18.64 | 9.98 |
| Zm00001d021950_P007 | Maize | endoplasmic reticulum, nucleus | 19.0 | 9.8 |
| Zm00001d026397_P001 | Maize | nucleus, plasma membrane | 17.92 | 9.6 |
| Zm00001d019086_P001 | Maize | nucleus | 17.92 | 9.4 |
| Zm00001d042133_P003 | Maize | cytosol | 12.54 | 8.79 |
Protein Annotations
| EntrezGene:100279322 | Gene3D:3.30.70.330 | MapMan:35.1 | ProteinID:AQK81946.1 | ProteinID:AQK81947.1 | ProteinID:AQK81951.1 |
| UniProt:B7ZXJ1 | EMBL:BT054033 | EMBL:BT088046 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 |
| PANTHER:PTHR44828 | PANTHER:PTHR44828:SF2 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 |
| UniParc:UPI00019171E7 | EnsemblPlantsGene:Zm00001d036789 | EnsemblPlants:Zm00001d036789_P001 | EnsemblPlants:Zm00001d036789_T001 | SEG:seg | : |
Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Coordinates
chr6:+:100928986..100933060
Molecular Weight (calculated)
29756.0 Da
IEP (calculated)
8.789
GRAVY (calculated)
-0.347
Length
279 amino acids
Sequence
(BLAST)
(BLAST)
001: MTPHRSPAGT GGSGGGGPPA LHYLSGPYGD TTFTKVFVGG LAWETRSEGL RAHFEVYGDI LEAVVITDRA TGRSKGYGFV TFQDPESARM ACMDPYPVID
101: GRRANCNLAI LGRPGPAVPF VAPIRPVIPY NGGVAVPGGM YVQSPTYQQS PYNYPQAFVY SSYGPSAYGP EYLYQQNAYG PYVGQQYIPV YGGPRTVGPA
201: VYPYGQSGQP VPSDHAYSLG YAPSRVLPLS NQNVNAANVV RIPPLQQFPP GAPRPQQQLL APARAPPFPQ NNVSEQATG
101: GRRANCNLAI LGRPGPAVPF VAPIRPVIPY NGGVAVPGGM YVQSPTYQQS PYNYPQAFVY SSYGPSAYGP EYLYQQNAYG PYVGQQYIPV YGGPRTVGPA
201: VYPYGQSGQP VPSDHAYSLG YAPSRVLPLS NQNVNAANVV RIPPLQQFPP GAPRPQQQLL APARAPPFPQ NNVSEQATG
001: MAYQPVPGSG FHYLNSPFGD TTFTKVFVGG LAWETQSETL RQHFEQYGEI LEAVVIADKN TGRSKGYGFV TFRDPEAARR ACADPTPIID GRRANCNLAS
101: LGRPRPPLPY AVIPNMPGRL RPASPYIGNV QGPRGSLIGN YPYQQPLPYN YQQGVVYPYG VTAYGPEYMY SQSQGLYSPY MGQQYLQVYG VPGAVNSPVY
201: QYGQLSQTIP NGHGYTAVQG YSVPGSHILQ LGGPTVSTMT TSSMPALQAP YPSGIPGPAP VQSHIIVHSP QFMQSTASDQ TTSYS
101: LGRPRPPLPY AVIPNMPGRL RPASPYIGNV QGPRGSLIGN YPYQQPLPYN YQQGVVYPYG VTAYGPEYMY SQSQGLYSPY MGQQYLQVYG VPGAVNSPVY
201: QYGQLSQTIP NGHGYTAVQG YSVPGSHILQ LGGPTVSTMT TSSMPALQAP YPSGIPGPAP VQSHIIVHSP QFMQSTASDQ TTSYS
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4I2E4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.