Factsheet for Zm00001d017829_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	vacuole
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU85520	Sorghum	nucleus, plastid	67.54	78.98
Zm00001d051627_P002	Maize	plastid	82.61	77.45
Os02t0714000-01	Rice	nucleus, plastid	58.84	70.73
TraesCS6B01G306600.1	Wheat	plastid	56.81	68.77
TraesCS6D01G258900.4	Wheat	plastid	57.39	68.75
TraesCS6A01G278300.3	Wheat	plastid	57.1	67.47
HORVU6Hr1G070150.1	Barley	plastid	31.59	65.27
HORVU6Hr1G070140.3	Barley	plastid	26.96	59.62
HORVU6Hr1G070170.1	Barley	mitochondrion, nucleus, plastid	57.1	59.34
AT5G53720.1	Thale cress	cytosol	13.62	47.0
CDY51790	Canola	cytosol	13.91	44.86
CDY28822	Canola	cytosol, nucleus, plastid	14.49	44.64
GSMUA_Achr9P14920_001	Banana	plastid	22.9	44.63
GSMUA_Achr3P06540_001	Banana	nucleus, plastid	20.0	43.4
PGSC0003DMT400025900	Potato	nucleus	35.94	43.21
Solyc04g082770.2.1	Tomato	cytosol, extracellular, nucleus, plastid	29.86	42.74
Zm00001d052212_P001	Maize	nucleus	19.13	40.99
Zm00001d036789_P001	Maize	cytosol, mitochondrion, nucleus	31.01	38.35
GSMUA_Achr8P23460_001	Banana	nucleus	23.19	33.9
KRH64318	Soybean	nucleus	24.64	33.07
Zm00001d042641_P001	Maize	nucleus	28.12	32.88
KRH53608	Soybean	nucleus	23.19	32.52
AT5G53680.1	Thale cress	cytosol	15.65	31.95
GSMUA_Achr5P05400_001	Banana	mitochondrion	24.06	31.44
AT5G11412.1	Thale cress	endoplasmic reticulum	15.94	31.43
Zm00001d046716_P001	Maize	nucleus	32.75	31.39
Zm00001d047753_P001	Maize	cytosol, mitochondrion, nucleus	23.77	29.39
Zm00001d028714_P001	Maize	cytosol, nucleus, plasma membrane	24.06	27.95
Zm00001d012238_P003	Maize	nucleus, plasma membrane, plastid	27.54	27.94
Zm00001d042042_P001	Maize	nucleus	27.25	27.65
Zm00001d018103_P002	Maize	plasma membrane	24.35	26.42
Zm00001d037209_P001	Maize	plastid	24.93	25.9
Bra029612.1-P	Field mustard	nucleus	15.07	18.12
AT3G06970.1	Thale cress	nucleus	15.36	16.72
CDX74070	Canola	cytosol	17.39	16.67
CDY08023	Canola	nucleus	17.39	16.67
Bra001228.1-P	Field mustard	cytosol	16.81	16.02
CDY24657	Canola	nucleus	15.65	15.88
CDY05301	Canola	nucleus	15.94	15.67
Zm00001d016349_P002	Maize	nucleus	15.36	13.8
Zm00001d044469_P003	Maize	nucleus	17.68	13.65
Zm00001d030579_P001	Maize	mitochondrion	13.33	13.22
Zm00001d011336_P002	Maize	nucleus	17.1	13.17
Zm00001d046190_P001	Maize	extracellular	15.36	12.68
Zm00001d036966_P001	Maize	nucleus, plasma membrane	15.07	12.59
Zm00001d019079_P001	Maize	cytosol	15.65	12.05
Zm00001d011885_P008	Maize	cytosol	12.46	11.94
Zm00001d007772_P001	Maize	nucleus	15.36	11.8
Zm00001d018730_P001	Maize	nucleus	12.75	11.76
Zm00001d007839_P001	Maize	cytosol	12.17	11.35
Zm00001d032739_P001	Maize	nucleus	14.49	11.29
Zm00001d019084_P002	Maize	nucleus	14.78	11.23
Zm00001d052820_P001	Maize	extracellular, mitochondrion, plasma membrane	12.46	11.23
Zm00001d034200_P001	Maize	nucleus	5.51	11.11
Zm00001d006704_P002	Maize	nucleus	15.36	10.95
Zm00001d002141_P006	Maize	nucleus	16.52	10.94
Zm00001d026397_P001	Maize	nucleus, plasma membrane	15.94	10.56
Zm00001d019086_P001	Maize	nucleus	16.23	10.53
Zm00001d034201_P001	Maize	nucleus	7.54	10.36
Zm00001d040344_P001	Maize	extracellular, plasma membrane	13.62	10.35
Zm00001d021950_P007	Maize	endoplasmic reticulum, nucleus	15.94	10.17
Zm00001d014058_P002	Maize	plastid	14.2	10.17
Zm00001d053572_P002	Maize	cytosol	15.94	10.02
Zm00001d042133_P003	Maize	cytosol	8.7	7.54

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	UniProt:A0A1D6HI41	ProteinID:AQK74176.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR000504
InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44828	PANTHER:PTHR44828:SF1
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	TMHMM:TMhelix	UniParc:UPI0008427BDF
EnsemblPlantsGene:Zm00001d017829	EnsemblPlants:Zm00001d017829_P002	EnsemblPlants:Zm00001d017829_T002	SEG:seg	:	:

Description

RNA-binding (RRM/RBD/RNP motifs) family protein

Coordinates

chr5:+:207953995..207958553

Molecular Weight (calculated)

37014.5 Da

IEP (calculated)

9.282

GRAVY (calculated)

-0.188

Length

345 amino acids

Sequence
(BLAST)

001: MAMQQHAASA SSSSLGLHLL ASPSSIREAT HTKVFVGGLA WETSSDRLRR FYERFGDILE AVVITDRHSG RSKGYGFVTF REAESASKAC EDPTPVIDGR
101: RANCNLASLG RAQHPVPPGR PRSAGSYLGV PVPKAFYLGG YSHHRPFPLG YYQGFPVPQY SYPSYGTEYI YPQGTLNSYS GQQYLPIYGV SAAANTSNQA
201: FSQLSPSVSG GGNGYLSVHS YNVPGNQYVQ LTGSNFSGAS PTARPSIQTS FLVGNVVPLD CSRTKKSSVA VFTAFVLAWQ AIILAFIRLS LSWSTDVPGN
301: HEVAPMDGAS DPRVTVALAV SLSLNRKRDG NVAYAGMESS ICKMD

Best Arabidopsis Sequence Match ( AT1G20880.1 )
(BLAST)

001: MAYHSIPSSG FHYLNSPFGD TTFTKVFVGG LAWETQSETL RRHFDQYGDI LEAVVITDKN TGRSKGYGFV TFRDPEAARR ACVDPTPIID GRRANCNLAS
101: LGRSRPPMQY AVIPHAPGRV RPPSPYVGSV QSPRGLHFGS HPYHQPPTYN YQQGVVYPYG VTPYGPDYMY SQSQGFYGPY MGQQYLQVYG VPGAVNSPGY
201: QYGQLSHTIP GAHGYTAGQG YSHPGSHVLQ LGATSPMSAI QSPYPSPSAP THQRVIVQTP PQYIQSSGSD QTTG

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4HUQ5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.