Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES06526 | Sorghum | nucleus | 94.53 | 92.84 |
| Os02t0221500-01 | Rice | nucleus | 83.07 | 80.35 |
| TraesCS6D01G173900.1 | Wheat | nucleus | 83.33 | 78.24 |
| TraesCS6A01G187000.1 | Wheat | nucleus | 82.81 | 77.0 |
| TraesCS6B01G217500.1 | Wheat | nucleus | 82.55 | 76.57 |
| HORVU6Hr1G040220.5 | Barley | plastid | 83.07 | 68.75 |
| Zm00001d036966_P001 | Maize | nucleus, plasma membrane | 70.31 | 65.38 |
| Zm00001d046190_P001 | Maize | extracellular | 70.05 | 64.35 |
| GSMUA_Achr7P13480_001 | Banana | nucleus | 56.25 | 64.09 |
| Zm00001d053572_P002 | Maize | cytosol | 91.15 | 63.75 |
| GSMUA_Achr10P... | Banana | nucleus | 53.39 | 61.56 |
| Solyc03g121710.2.1 | Tomato | nucleus | 37.76 | 53.9 |
| VIT_09s0002g02350.t01 | Wine grape | cytosol | 46.09 | 50.14 |
| PGSC0003DMT400006638 | Potato | nucleus | 47.14 | 46.89 |
| CDY26229 | Canola | nucleus | 44.53 | 46.09 |
| CDY48318 | Canola | nucleus | 44.53 | 45.97 |
| AT1G17640.1 | Thale cress | nucleus | 43.23 | 44.99 |
| KRH23293 | Soybean | nucleus | 40.89 | 44.48 |
| Zm00001d030579_P001 | Maize | mitochondrion | 39.84 | 43.97 |
| Zm00001d052820_P001 | Maize | extracellular, mitochondrion, plasma membrane | 41.93 | 42.04 |
| Solyc06g062740.1.1 | Tomato | cytosol | 20.31 | 39.59 |
| PGSC0003DMT400012372 | Potato | nucleus | 29.43 | 38.05 |
| Solyc06g062730.1.1 | Tomato | nucleus | 30.47 | 31.88 |
| PGSC0003DMT400012369 | Potato | nucleus | 35.68 | 31.35 |
| Zm00001d032739_P001 | Maize | nucleus | 34.9 | 30.25 |
| Zm00001d034200_P001 | Maize | nucleus | 13.02 | 29.24 |
| Zm00001d014058_P002 | Maize | plastid | 35.16 | 28.01 |
| Zm00001d034201_P001 | Maize | nucleus | 17.97 | 27.49 |
| Zm00001d011885_P008 | Maize | cytosol | 24.74 | 26.39 |
| Zm00001d052212_P001 | Maize | nucleus | 10.68 | 25.47 |
| Zm00001d007839_P001 | Maize | cytosol | 24.48 | 25.41 |
| Zm00001d019079_P001 | Maize | cytosol | 29.17 | 25.0 |
| Zm00001d007772_P001 | Maize | nucleus | 29.17 | 24.94 |
| Zm00001d018730_P001 | Maize | nucleus | 24.22 | 24.87 |
| Zm00001d019084_P002 | Maize | nucleus | 28.39 | 24.01 |
| Zm00001d006704_P002 | Maize | nucleus | 29.17 | 23.14 |
| Zm00001d019086_P001 | Maize | nucleus | 28.91 | 20.86 |
| Zm00001d021950_P007 | Maize | endoplasmic reticulum, nucleus | 29.17 | 20.7 |
| Zm00001d042641_P001 | Maize | nucleus | 15.89 | 20.68 |
| Zm00001d036789_P001 | Maize | cytosol, mitochondrion, nucleus | 14.84 | 20.43 |
| Zm00001d044469_P003 | Maize | nucleus | 23.18 | 19.91 |
| Zm00001d011336_P002 | Maize | nucleus | 22.92 | 19.64 |
| Zm00001d047753_P001 | Maize | cytosol, mitochondrion, nucleus | 13.54 | 18.64 |
| Zm00001d042133_P003 | Maize | cytosol | 19.27 | 18.59 |
| Zm00001d028714_P001 | Maize | cytosol, nucleus, plasma membrane | 13.8 | 17.85 |
| Zm00001d012238_P003 | Maize | nucleus, plasma membrane, plastid | 15.62 | 17.65 |
| Zm00001d042042_P001 | Maize | nucleus | 14.84 | 16.76 |
| Zm00001d040344_P001 | Maize | extracellular, plasma membrane | 19.01 | 16.08 |
| Zm00001d046716_P001 | Maize | nucleus | 14.58 | 15.56 |
| Zm00001d018103_P002 | Maize | plasma membrane | 12.76 | 15.41 |
| Zm00001d017829_P002 | Maize | plastid | 13.8 | 15.36 |
| Zm00001d037209_P001 | Maize | plastid | 13.28 | 15.36 |
| Zm00001d051627_P002 | Maize | plastid | 13.8 | 14.4 |
| Zm00001d002141_P006 | Maize | nucleus | 18.75 | 13.82 |
| Zm00001d026397_P001 | Maize | nucleus, plasma membrane | 18.75 | 13.82 |
Protein Annotations
| EntrezGene:100382538 | Gene3D:3.30.70.330 | MapMan:35.1 | ProteinID:AQK70523.1 | ProteinID:AQK70524.1 | ProteinID:AQK70526.1 |
| ProteinID:AQK70527.1 | EMBL:BT064698 | UniProt:C0P8S9 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PRINTS:PR01228 |
| PFscan:PS50102 | PANTHER:PTHR45276 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 |
| UniParc:UPI000194B19B | EnsemblPlantsGene:Zm00001d016349 | EnsemblPlants:Zm00001d016349_P002 | EnsemblPlants:Zm00001d016349_T002 | SEG:seg | : |
Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Coordinates
chr5:+:158778717..158783175
Molecular Weight (calculated)
39137.4 Da
IEP (calculated)
6.193
GRAVY (calculated)
-0.715
Length
384 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGYPEDNQH ALNGYDDEEV DEEGHPGRRG GRDGASGYGD AGGEDVRGAG GDSSGKIFVG GVAWETTEES FSKHFEKYGA ITDSVIMKDK HTKMPRGFGF
101: VTFSDPSVID KVLEDEHVID GRTVEVKRTV PREEMNTKDG PKTRKIFIGG LPASLTEDEL KDHFSLYGKV LEHQIMLDHS TGRSRGFGFV TFESEDSVER
201: VISEGRMRDL GGKQVEIKKA EPKKHGSDNI GNGRSSQGGG GYRSTYRGGG GAGSGSSGSG GGGYGFGDAY RSAAASYGYD GGAGAGYGYG RGYGYGGNAG
301: FASGFGGGYG GSMYGGAYGA YGAYGGGAYG GGAYGGGAYG GSAYGGAPGG GYGTGGYGSY GGAGGTGGGS TGARGSSRYH PYGK
101: VTFSDPSVID KVLEDEHVID GRTVEVKRTV PREEMNTKDG PKTRKIFIGG LPASLTEDEL KDHFSLYGKV LEHQIMLDHS TGRSRGFGFV TFESEDSVER
201: VISEGRMRDL GGKQVEIKKA EPKKHGSDNI GNGRSSQGGG GYRSTYRGGG GAGSGSSGSG GGGYGFGDAY RSAAASYGYD GGAGAGYGYG RGYGYGGNAG
301: FASGFGGGYG GSMYGGAYGA YGAYGGGAYG GGAYGGGAYG GSAYGGAPGG GYGTGGYGSY GGAGGTGGGS TGARGSSRYH PYGK
001: MDYNSDRGYD DSYHHHVHDE QLPQSDFEVE TFDDRRNGGA AVDTGGIQMK HSVDHRHSSS SMSSPGKLFV GGVSWETTAE TFANYFGKFG EVVDSVIMTD
101: RITGNPRGFG FVTFADSAVA EKVLEEDHVI DDRKVDLKRT LPRGDKDTDI KAVSKTRKIF VGGLPPLLEE DELKNYFCVY GDIIEHQIMY DHHTGRSRGF
201: GFVTFQTEDS VDRLFSDGKV HELGDKQVEI KRAEPKRTGR DNSFRSYGAS GKYDQEDSYS GKANEDYSMY SGYGGYGGYG AYAGNSMVNP AGFYGYGGGY
301: GYGYGYGGQM FNMGYGAGGY SHMGSGYGVA AAAAYGGGKS HGNGNNGSSS GKGNGTNGSG PDRYHPYQK
101: RITGNPRGFG FVTFADSAVA EKVLEEDHVI DDRKVDLKRT LPRGDKDTDI KAVSKTRKIF VGGLPPLLEE DELKNYFCVY GDIIEHQIMY DHHTGRSRGF
201: GFVTFQTEDS VDRLFSDGKV HELGDKQVEI KRAEPKRTGR DNSFRSYGAS GKYDQEDSYS GKANEDYSMY SGYGGYGGYG AYAGNSMVNP AGFYGYGGGY
301: GYGYGYGGQM FNMGYGAGGY SHMGSGYGVA AAAAYGGGKS HGNGNNGSSS GKGNGTNGSG PDRYHPYQK
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4I906]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.