Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY26229 | Canola | nucleus | 86.18 | 85.71 |
| CDY48318 | Canola | nucleus | 86.18 | 85.48 |
| Os06t0566100-01 | Rice | cytosol, nucleus | 39.02 | 49.32 |
| GSMUA_Achr7P13480_001 | Banana | nucleus | 44.44 | 48.66 |
| Solyc03g121710.2.1 | Tomato | nucleus | 33.88 | 46.47 |
| VIT_09s0002g02350.t01 | Wine grape | cytosol | 44.17 | 46.18 |
| GSMUA_Achr10P... | Banana | nucleus | 40.65 | 45.05 |
| EES06526 | Sorghum | nucleus | 46.61 | 43.99 |
| KRH23293 | Soybean | nucleus | 42.01 | 43.91 |
| TraesCS7A01G360900.1 | Wheat | nucleus | 47.7 | 43.89 |
| TraesCS7B01G266900.1 | Wheat | nucleus | 44.44 | 43.39 |
| Zm00001d016349_P002 | Maize | nucleus | 44.99 | 43.23 |
| HORVU7Hr1G087550.1 | Barley | nucleus | 45.8 | 42.36 |
| Os02t0221500-01 | Rice | nucleus | 45.53 | 42.32 |
| Zm00001d036966_P001 | Maize | nucleus, plasma membrane | 46.61 | 41.65 |
| TraesCS6D01G173900.1 | Wheat | nucleus | 45.8 | 41.32 |
| TraesCS6B01G217500.1 | Wheat | nucleus | 46.07 | 41.06 |
| TraesCS6A01G187000.1 | Wheat | nucleus | 45.8 | 40.92 |
| EER88542 | Sorghum | nucleus | 45.8 | 40.82 |
| Zm00001d046190_P001 | Maize | extracellular | 45.8 | 40.43 |
| AT3G13224.2 | Thale cress | nucleus | 37.4 | 38.55 |
| TraesCS7D01G362200.1 | Wheat | nucleus | 45.8 | 38.06 |
| PGSC0003DMT400012372 | Potato | nucleus | 30.62 | 38.05 |
| PGSC0003DMT400006638 | Potato | nucleus | 39.57 | 37.82 |
| Solyc06g062740.1.1 | Tomato | cytosol | 19.78 | 37.06 |
| HORVU6Hr1G040220.5 | Barley | plastid | 45.8 | 36.42 |
| AT5G40490.1 | Thale cress | nucleus | 41.46 | 36.17 |
| PGSC0003DMT400012369 | Potato | nucleus | 37.94 | 32.04 |
| Solyc06g062730.1.1 | Tomato | nucleus | 31.44 | 31.61 |
| AT2G33410.1 | Thale cress | nucleus | 34.15 | 31.19 |
| Zm00001d053572_P002 | Maize | cytosol | 45.8 | 30.78 |
| AT4G14300.1 | Thale cress | nucleus | 33.6 | 30.17 |
| AT5G53720.1 | Thale cress | cytosol | 8.13 | 30.0 |
| AT1G58470.2 | Thale cress | cytosol, nucleus, plastid | 23.85 | 24.44 |
| AT3G07810.2 | Thale cress | nucleus | 32.79 | 24.44 |
| AT4G26650.1 | Thale cress | nucleus | 30.08 | 24.4 |
| AT5G47620.4 | Thale cress | cytoskeleton, cytosol, nucleus | 29.27 | 23.84 |
| AT1G33470.1 | Thale cress | cytosol | 15.18 | 22.86 |
| AT4G36960.2 | Thale cress | cytosol | 23.31 | 22.69 |
| AT1G20880.1 | Thale cress | nucleus | 15.72 | 21.17 |
| AT5G55550.10 | Thale cress | nucleus | 28.73 | 20.91 |
| AT5G53680.1 | Thale cress | cytosol | 9.49 | 20.71 |
| AT3G15010.2 | Thale cress | nucleus | 22.49 | 20.54 |
| AT1G76460.1 | Thale cress | nucleus | 15.45 | 20.0 |
| AT5G11412.1 | Thale cress | endoplasmic reticulum | 8.94 | 18.86 |
| AT1G78260.1 | Thale cress | nucleus | 13.55 | 17.42 |
| AT2G46780.1 | Thale cress | nucleus | 15.72 | 17.26 |
| AT3G54770.1 | Thale cress | nucleus | 12.2 | 17.24 |
| AT1G22330.1 | Thale cress | nucleus | 13.55 | 17.18 |
| AT1G22910.3 | Thale cress | nucleus | 15.18 | 16.14 |
| AT2G41060.3 | Thale cress | nucleus | 18.97 | 15.52 |
| AT2G22090.2 | Thale cress | nucleus | 13.82 | 14.7 |
| AT3G56860.10 | Thale cress | nucleus | 18.7 | 14.44 |
| AT3G06970.1 | Thale cress | nucleus | 11.38 | 13.25 |
| AT2G22100.1 | Thale cress | nucleus | 12.47 | 12.04 |
| AT2G19380.1 | Thale cress | nucleus | 11.65 | 7.01 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EntrezGene:838341 | ProteinID:AEE29617.1 | ProteinID:ANM57816.1 | ProteinID:ANM57817.1 |
| ArrayExpress:AT1G17640 | EnsemblPlantsGene:AT1G17640 | RefSeq:AT1G17640 | TAIR:AT1G17640 | RefSeq:AT1G17640-TAIR-G | EnsemblPlants:AT1G17640.1 |
| TAIR:AT1G17640.1 | UniProt:F4I906 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR000504 | InterPro:IPR012677 |
| RefSeq:NP_001319031.1 | RefSeq:NP_001320299.1 | RefSeq:NP_173208.1 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007115 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020038 | PO:PO:0025022 | PFscan:PS50102 | PANTHER:PTHR45276 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0000162DD5 | SEG:seg |
Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4I906]
Coordinates
chr1:-:6067086..6069392
Molecular Weight (calculated)
40205.8 Da
IEP (calculated)
5.842
GRAVY (calculated)
-0.793
Length
369 amino acids
Sequence
(BLAST)
(BLAST)
001: MDYNSDRGYD DSYHHHVHDE QLPQSDFEVE TFDDRRNGGA AVDTGGIQMK HSVDHRHSSS SMSSPGKLFV GGVSWETTAE TFANYFGKFG EVVDSVIMTD
101: RITGNPRGFG FVTFADSAVA EKVLEEDHVI DDRKVDLKRT LPRGDKDTDI KAVSKTRKIF VGGLPPLLEE DELKNYFCVY GDIIEHQIMY DHHTGRSRGF
201: GFVTFQTEDS VDRLFSDGKV HELGDKQVEI KRAEPKRTGR DNSFRSYGAS GKYDQEDSYS GKANEDYSMY SGYGGYGGYG AYAGNSMVNP AGFYGYGGGY
301: GYGYGYGGQM FNMGYGAGGY SHMGSGYGVA AAAAYGGGKS HGNGNNGSSS GKGNGTNGSG PDRYHPYQK
101: RITGNPRGFG FVTFADSAVA EKVLEEDHVI DDRKVDLKRT LPRGDKDTDI KAVSKTRKIF VGGLPPLLEE DELKNYFCVY GDIIEHQIMY DHHTGRSRGF
201: GFVTFQTEDS VDRLFSDGKV HELGDKQVEI KRAEPKRTGR DNSFRSYGAS GKYDQEDSYS GKANEDYSMY SGYGGYGGYG AYAGNSMVNP AGFYGYGGGY
301: GYGYGYGGQM FNMGYGAGGY SHMGSGYGVA AAAAYGGGKS HGNGNNGSSS GKGNGTNGSG PDRYHPYQK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.