Factsheet for PGSC0003DMT400006638

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g121710.2.1	Tomato	nucleus	67.88	97.4
Os06t0566100-01	Rice	cytosol, nucleus	41.45	54.79
GSMUA_Achr7P13480_001	Banana	nucleus	45.6	52.23
GSMUA_Achr10P...	Banana	nucleus	43.78	50.75
VIT_09s0002g02350.t01	Wine grape	cytosol	46.11	50.42
Zm00001d016349_P002	Maize	nucleus	46.89	47.14
EES06526	Sorghum	nucleus	47.67	47.06
KRH23293	Soybean	nucleus	43.01	47.03
TraesCS6D01G173900.1	Wheat	nucleus	48.7	45.97
EER88542	Sorghum	nucleus	49.22	45.89
Os02t0221500-01	Rice	nucleus	46.89	45.59
Zm00001d036966_P001	Maize	nucleus, plasma membrane	48.7	45.52
TraesCS6A01G187000.1	Wheat	nucleus	48.19	45.04
TraesCS7B01G266900.1	Wheat	nucleus	44.04	44.97
TraesCS7A01G360900.1	Wheat	nucleus	46.63	44.89
HORVU7Hr1G087550.1	Barley	nucleus	46.37	44.86
TraesCS6B01G217500.1	Wheat	nucleus	47.93	44.69
Zm00001d046190_P001	Maize	extracellular	47.67	44.02
PGSC0003DMT400044868	Potato	nucleus	36.53	41.23
HORVU6Hr1G040220.5	Barley	plastid	48.45	40.3
CDY26229	Canola	nucleus	38.6	40.16
TraesCS7D01G362200.1	Wheat	nucleus	45.85	39.86
CDY48318	Canola	nucleus	38.34	39.78
PGSC0003DMT400012372	Potato	nucleus	30.57	39.73
AT1G17640.1	Thale cress	nucleus	37.82	39.57
PGSC0003DMT400032811	Potato	nucleus	37.56	37.28
PGSC0003DMT400012369	Potato	nucleus	40.67	35.93
Zm00001d053572_P002	Maize	cytosol	47.93	33.7
PGSC0003DMT400012586	Potato	nucleus	27.46	30.81
PGSC0003DMT400035000	Potato	nucleus	34.2	29.86
PGSC0003DMT400009762	Potato	nucleus	30.57	29.72
PGSC0003DMT400044195	Potato	nucleus	34.2	27.79
PGSC0003DMT400074192	Potato	nucleus	33.42	27.22
PGSC0003DMT400034757	Potato	nucleus	32.64	26.92
PGSC0003DMT400037271	Potato	nucleus	32.38	26.6
PGSC0003DMT400044866	Potato	extracellular	36.79	26.59
PGSC0003DMT400076643	Potato	nucleus	31.87	25.95
PGSC0003DMT400060554	Potato	nucleus	30.57	25.11
PGSC0003DMT400010280	Potato	cytosol	23.83	24.8
PGSC0003DMT400008944	Potato	nucleus	14.77	21.59
PGSC0003DMT400031324	Potato	cytosol	7.77	21.58
PGSC0003DMT400025900	Potato	nucleus	15.54	20.91
PGSC0003DMT400032256	Potato	nucleus	16.06	19.87
PGSC0003DMT400035478	Potato	nucleus, plastid	14.51	19.86
PGSC0003DMT400027411	Potato	nucleus	12.95	19.68
PGSC0003DMT400008213	Potato	nucleus	21.5	19.58
PGSC0003DMT400058431	Potato	nucleus	22.8	17.96
PGSC0003DMT400039802	Potato	nucleus	20.21	17.49
PGSC0003DMT400031418	Potato	extracellular, golgi	15.54	16.48
PGSC0003DMT400008583	Potato	nucleus	22.54	14.55
PGSC0003DMT400072501	Potato	nucleus	15.29	14.32
PGSC0003DMT400016249	Potato	nucleus	17.1	13.41

Protein Annotations

EntrezGene:102581600	Gene3D:3.30.70.330	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	UniProt:M0ZRR5	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
EnsemblPlantsGene:PGSC0003DMG400002582	PGSC:PGSC0003DMG400002582	EnsemblPlants:PGSC0003DMT400006638	PFscan:PS50102	PANTHER:PTHR45276	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI00029612A6	RefSeq:XP_006343133.1	RefSeq:XP_015162233.1
SEG:seg	:	:	:	:	:

Description

Heterogeneous nuclear ribonucleoprotein A3 [Source:PGSC_GENE;Acc:PGSC0003DMG400002582]

Coordinates

chr3:+:60990840..60995358

Molecular Weight (calculated)

40131.9 Da

IEP (calculated)

6.732

GRAVY (calculated)

-0.665

Length

386 amino acids

Sequence
(BLAST)

001: MDYVAEQNVS EEQERNDGSA GHELKHSLDD SSAGKLFVGG IAWETREESF RKYFSRFGEI TDCVIMMDKV SGRPRGFGFV TFADPEAANK VLEEEHIIDG
101: RTVEVKRTVP KEDMQVKGSP KTKKIFVGGL PLTLTEDELK EYFSSYGHVL EQQIMLDRES GRSRGFGFIT FDSENAVEKV LNNGRMHEIH GKQVEIKRAE
201: PKRAGAENAI ESRQHRGGSG SRSYNNFGGS EGGYGGGYGR GYGGYGGYGG GTGYGGGGGG AAGYGGAGAG AGYGGYGNIG GSYGGGGAGY FSGYGGYGYG
301: FGFSGPMYGA AGYGGTSYGA PGSYGGAAGY ASGRGYTSSD DGSWYGGARS SASFNAKGYD TGGSTGGAKA YGNGGAAGGR FHPYRN

Best Arabidopsis Sequence Match ( AT1G17640.3 )
(BLAST)

001: MDYNSDRGYD DSYHHHVHDE QLPQSDFEVE TFDDRRNGGA AVDTGGIQMK HSVDHRHSSS SMSSPGKLFV GGVSWETTAE TFANYFGKFG EVVDSVIMTD
101: RITGNPRGFG FVTFADSAVA EKVLEEDHVI DDRKVDLKRT LPRGDKDTDI KAVSKTRKIF VGGLPPLLEE DELKNYFCVY GDIIEHQIMY DHHTGRSRGF
201: GFVTFQTEDS VDRLFSDGKV HELGDKQVEI KRAEPKRTGR DNSFRSYGAS GKYDQEDSYS GKANEDYSMY SGYGGYGGYG AYAGNSMVNP AGFYGYGGGY
301: GYGYGYGGQM FNMGYGAGGY SHMGSGYGVA AAAAYGGGKS HGNGNNGSSS GKGNGTNGSG PDRYHPYQK

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4I906]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.