Factsheet for PGSC0003DMT400035478

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400012431
PGSC0003DMT400050252
PGSC0003DMT400058919
PGSC0003DMT400083086

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20880.1	PGSC0003DMT400012431	AT3G14100.1	21798944
AT1G20880.1	PGSC0003DMT400058919	AT3G14100.1	21798944
AT1G20880.1	PGSC0003DMT400050252	AT5G61380.1	21798944
AT1G20880.1	PGSC0003DMT400083086	AT5G61380.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g082270.2.1	Tomato	nucleus	96.45	96.45
VIT_18s0122g00660.t01	Wine grape	nucleus, plastid	55.67	55.09
KRH60871	Soybean	nucleus, plastid	54.61	53.85
KRH51553	Soybean	nucleus, plastid	54.26	53.5
CDY31508	Canola	nucleus	46.81	52.8
Bra025852.1-P	Field mustard	nucleus	48.23	52.11
CDY31859	Canola	nucleus	43.97	51.45
CDX88283	Canola	nucleus	51.06	51.43
CDY33653	Canola	nucleus	46.1	51.38
CDY29496	Canola	nucleus	47.52	51.34
AT1G76460.1	Thale cress	nucleus	51.42	50.88
CDX96615	Canola	nucleus	45.39	50.79
Bra016445.1-P	Field mustard	nucleus	45.74	50.0
PGSC0003DMT400025900	Potato	nucleus	50.71	49.83
CDY01349	Canola	nucleus	42.55	49.79
AT1G20880.1	Thale cress	nucleus	48.23	49.63
Bra012254.1-P	Field mustard	nucleus	41.84	48.96
CDX87594	Canola	nucleus	51.42	45.31
Bra015741.1-P	Field mustard	nucleus, plastid, vacuole	40.78	36.86
PGSC0003DMT400008944	Potato	nucleus	34.04	36.36
PGSC0003DMT400027411	Potato	nucleus	27.66	30.71
PGSC0003DMT400032256	Potato	nucleus	17.38	15.71
PGSC0003DMT400039802	Potato	nucleus	23.4	14.8
PGSC0003DMT400044868	Potato	nucleus	17.73	14.62
PGSC0003DMT400006638	Potato	nucleus	19.86	14.51
PGSC0003DMT400008213	Potato	nucleus	21.63	14.39
PGSC0003DMT400012372	Potato	nucleus	14.89	14.14
PGSC0003DMT400072501	Potato	nucleus	19.5	13.35
PGSC0003DMT400012586	Potato	nucleus	14.89	12.21
PGSC0003DMT400012369	Potato	nucleus	18.79	12.13
PGSC0003DMT400031418	Potato	extracellular, golgi	15.6	12.09
PGSC0003DMT400032811	Potato	nucleus	16.67	12.08
PGSC0003DMT400010280	Potato	cytosol	15.6	11.86
PGSC0003DMT400016249	Potato	nucleus	20.57	11.79
PGSC0003DMT400009762	Potato	nucleus	16.31	11.59
PGSC0003DMT400035000	Potato	nucleus	17.73	11.31
PGSC0003DMT400044195	Potato	nucleus	18.79	11.16
PGSC0003DMT400034757	Potato	nucleus	18.44	11.11
PGSC0003DMT400074192	Potato	nucleus	18.09	10.76
PGSC0003DMT400058431	Potato	nucleus	18.44	10.61
PGSC0003DMT400037271	Potato	nucleus	17.02	10.21
PGSC0003DMT400060554	Potato	nucleus	17.02	10.21
PGSC0003DMT400076643	Potato	nucleus	16.31	9.7
PGSC0003DMT400044866	Potato	extracellular	17.38	9.18
PGSC0003DMT400031324	Potato	cytosol	3.55	7.19
PGSC0003DMT400008583	Potato	nucleus	13.12	6.19

Protein Annotations

EntrezGene:102600121	Gene3D:3.30.70.330	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	UniProt:M1B2C0	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
EnsemblPlantsGene:PGSC0003DMG401013639	PGSC:PGSC0003DMG401013639	EnsemblPlants:PGSC0003DMT400035478	PFscan:PS50102	PANTHER:PTHR44828	PANTHER:PTHR44828:SF1
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002969640	RefSeq:XP_006364833.1
SEG:seg	:	:	:	:	:

Description

RNA recognition motif-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG401013639]

Coordinates

chr2:+:38042467..38047608

Molecular Weight (calculated)

30528.0 Da

IEP (calculated)

9.337

GRAVY (calculated)

-0.483

Length

282 amino acids

Sequence
(BLAST)

001: MAYQMSPGGS SSGGGSGSPF AGRGPYGVGD TTYTKVFVGG LAWETKSESL RSYFEQFGDI IEAVVITDKH TGRSKGYGFV TFHDPEAAWR ACTNPNPIID
101: GRRANCNLAS LGRPQGLLPY GRLRSSMTYL GNPQAPRGMY MGSPYYQLPV PYSYQSGFSY PPYRFPAYGP DYVYPQMYGI PSTVGTNTLQ FGQLGAPPGS
201: PAYAFRGHLM TGPQMVQYQR PNASGTTTDN VPLMQLPYHS VKVLDYPISS GITMPSPRQP QNAVQARPPQ FTQSSGSDQM AG

Best Arabidopsis Sequence Match ( AT1G76460.1 )
(BLAST)

001: MAYQPVPGSG FHYLNSPFGD TTFTKVFVGG LAWETQSETL RQHFEQYGEI LEAVVIADKN TGRSKGYGFV TFRDPEAARR ACADPTPIID GRRANCNLAS
101: LGRPRPPLPY AVIPNMPGRL RPASPYIGNV QGPRGSLIGN YPYQQPLPYN YQQGVVYPYG VTAYGPEYMY SQSQGLYSPY MGQQYLQVYG VPGAVNSPVY
201: QYGQLSQTIP NGHGYTAVQG YSVPGSHILQ LGGPTVSTMT TSSMPALQAP YPSGIPGPAP VQSHIIVHSP QFMQSTASDQ TTSYS

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4I2E4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.