Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra012964.1-P | |
| Bra035933.1-P | |
| Bra038436.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G20880.1 | Bra038436.1-P | AT1G31750.1 | 21798944 |
| AT1G20880.1 | Bra012964.1-P | AT5G61380.1 | 21798944 |
| AT1G20880.1 | Bra035933.1-P | AT5G61380.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY31508 | Canola | nucleus | 93.49 | 97.6 |
| Bra016445.1-P | Field mustard | nucleus | 87.74 | 88.76 |
| Bra012254.1-P | Field mustard | nucleus | 78.54 | 85.06 |
| AT1G20880.1 | Thale cress | nucleus | 83.14 | 79.2 |
| KRH51553 | Soybean | nucleus, plastid | 71.26 | 65.03 |
| KRH60871 | Soybean | nucleus, plastid | 70.11 | 63.99 |
| VIT_18s0122g00660.t01 | Wine grape | nucleus, plastid | 69.35 | 63.51 |
| Bra015741.1-P | Field mustard | nucleus, plastid, vacuole | 65.9 | 55.13 |
| PGSC0003DMT400035478 | Potato | nucleus, plastid | 52.11 | 48.23 |
| Solyc02g082270.2.1 | Tomato | nucleus | 52.11 | 48.23 |
| Bra024547.1-P | Field mustard | nucleus | 36.4 | 39.75 |
| Bra012350.1-P | Field mustard | nucleus | 37.55 | 39.36 |
| Bra035441.1-P | Field mustard | mitochondrion, nucleus, plastid | 11.11 | 37.18 |
| Bra007096.1-P | Field mustard | nucleus | 34.48 | 34.75 |
| Bra031385.1-P | Field mustard | nucleus | 37.93 | 34.14 |
| Bra003651.1-P | Field mustard | nucleus | 35.25 | 33.95 |
| Bra012321.1-P | Field mustard | nucleus | 37.55 | 33.91 |
| Bra004508.1-P | Field mustard | nucleus | 39.85 | 33.33 |
| Bra010203.1-P | Field mustard | nucleus | 38.31 | 32.79 |
| Bra040485.1-P | Field mustard | nucleus | 40.23 | 32.21 |
| Bra029612.1-P | Field mustard | nucleus | 20.69 | 18.82 |
| Bra031230.1-P | Field mustard | nucleus | 19.92 | 16.94 |
| Bra038113.1-P | Field mustard | nucleus | 26.05 | 16.43 |
| Bra039664.1-P | Field mustard | nucleus | 26.05 | 16.39 |
| Bra010757.1-P | Field mustard | nucleus | 22.61 | 15.45 |
| Bra001228.1-P | Field mustard | cytosol | 19.92 | 14.36 |
| Bra021850.1-P | Field mustard | nucleus | 19.54 | 13.9 |
| Bra005496.1-P | Field mustard | nucleus | 19.92 | 13.83 |
| Bra039380.1-P | Field mustard | nucleus | 18.39 | 13.26 |
| Bra022938.1-P | Field mustard | nucleus | 20.69 | 13.24 |
| Bra016954.1-P | Field mustard | nucleus | 22.22 | 13.18 |
| Bra024928.1-P | Field mustard | nucleus | 20.69 | 12.86 |
| Bra021062.1-P | Field mustard | nucleus | 19.16 | 12.76 |
| Bra007277.1-P | Field mustard | nucleus | 21.84 | 12.69 |
| Bra017475.1-P | Field mustard | nucleus | 20.69 | 12.65 |
| Bra014667.1-P | Field mustard | nucleus | 14.56 | 12.46 |
| Bra022145.1-P | Field mustard | nucleus | 20.69 | 11.74 |
| Bra027860.1-P | Field mustard | cytosol, nucleus, peroxisome | 16.09 | 11.54 |
| Bra017802.1-P | Field mustard | nucleus | 18.01 | 11.52 |
| Bra030265.1-P | Field mustard | nucleus | 16.09 | 11.48 |
| Bra001267.1-P | Field mustard | nucleus | 20.69 | 11.46 |
| Bra040031.1-P | Field mustard | nucleus | 20.69 | 11.11 |
| Bra029681.1-P | Field mustard | nucleus | 20.31 | 10.58 |
| Bra025568.1-P | Field mustard | nucleus | 21.46 | 10.28 |
| Bra026413.1-P | Field mustard | nucleus | 16.48 | 10.17 |
| Bra028973.1-P | Field mustard | nucleus | 16.09 | 9.7 |
| Bra019094.1-P | Field mustard | nucleus | 16.86 | 9.5 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EnsemblPlantsGene:Bra025852 | EnsemblPlants:Bra025852.1 | EnsemblPlants:Bra025852.1-P | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 |
| UniProt:M4EAP3 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44828 | PANTHER:PTHR44828:SF1 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000253EFDF | SEG:seg |
Description
AT1G20880 (E=1e-111) | RNA recognition motif (RRM)-containing protein
Coordinates
chrA06:-:8435320..8437015
Molecular Weight (calculated)
28385.2 Da
IEP (calculated)
8.791
GRAVY (calculated)
-0.497
Length
261 amino acids
Sequence
(BLAST)
(BLAST)
001: MAYHSIPGSG FHYSNSPFGD TTYTKVFVGG LAWETQSDTL RRHFEPFGDI LEAVVITDKN TGRSKGYGFV TFRDPEAARR ACVDATPIID GRRANCNLAS
101: LGRPRLPMHY AMIPNLPGRI RPASPYVGSV QGPRGSLFGS HPYQQPSAYS YQQGMMYPYG VTPYGPEYMY SQSQGLYGPY TGQQYLQVYG VPGAVNSPGY
201: QYGQLSQNIP GYTAIQGYSV PGSHIQSPYP SAIAGPSPTQ SHVIVQTPQH MQSSGSDQTT G
101: LGRPRLPMHY AMIPNLPGRI RPASPYVGSV QGPRGSLFGS HPYQQPSAYS YQQGMMYPYG VTPYGPEYMY SQSQGLYGPY TGQQYLQVYG VPGAVNSPGY
201: QYGQLSQNIP GYTAIQGYSV PGSHIQSPYP SAIAGPSPTQ SHVIVQTPQH MQSSGSDQTT G
001: MAYQPVPGSG FHYLNSPFGD TTFTKVFVGG LAWETQSETL RQHFEQYGEI LEAVVIADKN TGRSKGYGFV TFRDPEAARR ACADPTPIID GRRANCNLAS
101: LGRPRPPLPY AVIPNMPGRL RPASPYIGNV QGPRGSLIGN YPYQQPLPYN YQQGVVYPYG VTAYGPEYMY SQSQGLYSPY MGQQYLQVYG VPGAVNSPVY
201: QYGQLSQTIP NGHGYTAVQG YSVPGSHILQ LGGPTVSTMT TSSMPALQAP YPSGIPGPAP VQSHIIVHSP QFMQSTASDQ TTSYS
101: LGRPRPPLPY AVIPNMPGRL RPASPYIGNV QGPRGSLIGN YPYQQPLPYN YQQGVVYPYG VTAYGPEYMY SQSQGLYSPY MGQQYLQVYG VPGAVNSPVY
201: QYGQLSQTIP NGHGYTAVQG YSVPGSHILQ LGGPTVSTMT TSSMPALQAP YPSGIPGPAP VQSHIIVHSP QFMQSTASDQ TTSYS
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4I2E4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.