Factsheet for Bra029612.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24657	Canola	nucleus	94.08	79.41
CDY05301	Canola	nucleus	84.67	69.23
AT3G06970.1	Thale cress	nucleus	39.02	35.33
Bra001228.1-P	Field mustard	cytosol	42.51	33.7
HORVU6Hr1G070140.3	Barley	plastid	16.38	30.13
GSMUA_Achr4P09830_001	Banana	mitochondrion	15.68	29.8
GSMUA_Achr3P06540_001	Banana	nucleus, plastid	16.38	29.56
Bra035441.1-P	Field mustard	mitochondrion, nucleus, plastid	8.01	29.49
HORVU6Hr1G070150.1	Barley	plastid	16.38	28.14
Zm00001d052212_P001	Maize	nucleus	15.68	27.95
GSMUA_Achr9P14920_001	Banana	plastid	16.03	25.99
Os02t0755400-01	Rice	plastid	15.68	25.57
KRH64318	Soybean	nucleus	20.56	22.96
KRH53608	Soybean	nucleus	19.51	22.76
TraesCS4A01G068100.1	Wheat	nucleus	18.47	21.29
Solyc04g082770.2.1	Tomato	cytosol, extracellular, nucleus, plastid	17.77	21.16
Bra012254.1-P	Field mustard	nucleus	17.77	21.16
Bra012350.1-P	Field mustard	nucleus	18.12	20.88
TraesCS4D01G225900.1	Wheat	nucleus	18.12	20.88
GSMUA_Achr8P23460_001	Banana	nucleus	17.07	20.76
Bra025852.1-P	Field mustard	nucleus	18.82	20.69
Bra016445.1-P	Field mustard	nucleus	18.47	20.54
Bra024547.1-P	Field mustard	nucleus	17.07	20.5
Os02t0714000-01	Rice	nucleus, plastid	19.51	19.51
GSMUA_AchrUn_...	Banana	mitochondrion	16.38	19.5
GSMUA_Achr8P24330_001	Banana	nucleus, plastid	19.51	19.31
TraesCS6B01G306600.1	Wheat	plastid	19.16	19.3
Os06t0622900-01	Rice	cytosol, mitochondrion, nucleus	18.47	19.27
PGSC0003DMT400025900	Potato	nucleus	19.16	19.16
TraesCS6D01G258900.4	Wheat	plastid	19.16	19.1
TraesCS4B01G225300.1	Wheat	nucleus	18.12	19.05
HORVU4Hr1G063360.1	Barley	nucleus	18.12	18.98
TraesCS6A01G278300.3	Wheat	plastid	19.16	18.84
GSMUA_Achr5P05400_001	Banana	mitochondrion	17.07	18.56
TraesCS7A01G398200.1	Wheat	cytosol, mitochondrion, nucleus	18.12	18.37
TraesCS7B01G299000.1	Wheat	mitochondrion, nucleus, plastid	18.12	18.25
Bra007096.1-P	Field mustard	nucleus	16.38	18.15
TraesCS7D01G392500.1	Wheat	cytosol, nucleus, plastid	18.12	18.12
OQU85520	Sorghum	nucleus, plastid	18.47	17.97
Zm00001d036789_P001	Maize	cytosol, mitochondrion, nucleus	17.42	17.92
HORVU7Hr1G093450.6	Barley	nucleus	18.12	17.69
EER90058	Sorghum	plastid	17.42	17.48
Bra004508.1-P	Field mustard	nucleus	18.82	17.31
Bra031385.1-P	Field mustard	nucleus	17.42	17.24
Bra003651.1-P	Field mustard	nucleus	16.03	16.97
Bra012321.1-P	Field mustard	nucleus	17.07	16.95
HORVU6Hr1G070170.1	Barley	mitochondrion, nucleus, plastid	19.16	16.57
KXG30724	Sorghum	plastid	17.77	16.45
HORVU7Hr1G036920.2	Barley	mitochondrion, nucleus	17.07	16.39
Bra040485.1-P	Field mustard	nucleus	18.47	16.26
Zm00001d018103_P002	Maize	plasma membrane	17.77	16.04
Bra010203.1-P	Field mustard	nucleus	16.72	15.74
TraesCS6D01G297300.1	Wheat	plastid	17.07	15.71
TraesCS7B01G084600.1	Wheat	nucleus	16.38	15.67
TraesCS7D01G180800.1	Wheat	nucleus	16.38	15.61
HORVU6Hr1G078060.1	Barley	plastid	17.07	15.51
TraesCS7A01G178700.2	Wheat	nucleus	16.38	15.46
TraesCS6B01G348100.1	Wheat	plastid	16.72	15.43
Zm00001d017829_P002	Maize	plastid	18.12	15.07
Zm00001d037209_P001	Maize	plastid	16.72	14.46
Zm00001d046716_P001	Maize	nucleus	17.77	14.17
OQU76075	Sorghum	plastid	17.42	14.16
Os06t0220600-01	Rice	plastid	16.72	13.99
Zm00001d051627_P002	Maize	plastid	17.77	13.86
Bra031230.1-P	Field mustard	nucleus	14.29	13.36
Bra039664.1-P	Field mustard	nucleus	17.77	12.29
Bra038113.1-P	Field mustard	nucleus	17.07	11.84
Bra014667.1-P	Field mustard	nucleus	12.54	11.8
Bra021850.1-P	Field mustard	nucleus	14.98	11.72
Bra015741.1-P	Field mustard	nucleus, plastid, vacuole	12.2	11.22
Bra010757.1-P	Field mustard	nucleus	14.63	10.99
Bra022938.1-P	Field mustard	nucleus	15.33	10.78
Bra005496.1-P	Field mustard	nucleus	13.94	10.64
Bra021062.1-P	Field mustard	nucleus	13.94	10.2
TraesCS6A01G318100.1	Wheat	nucleus	17.07	10.06
Bra024928.1-P	Field mustard	nucleus	14.29	9.76
Bra007277.1-P	Field mustard	nucleus	14.98	9.58
Bra030265.1-P	Field mustard	nucleus	12.2	9.56
Bra017475.1-P	Field mustard	nucleus	13.94	9.37
Bra039380.1-P	Field mustard	nucleus	11.5	9.12
Bra027860.1-P	Field mustard	cytosol, nucleus, peroxisome	11.5	9.07
Bra028973.1-P	Field mustard	nucleus	13.59	9.01
Bra001267.1-P	Field mustard	nucleus	14.63	8.92
Bra022145.1-P	Field mustard	nucleus	14.29	8.91
Bra016954.1-P	Field mustard	nucleus	13.59	8.86
Bra040031.1-P	Field mustard	nucleus	14.98	8.85
Bra017802.1-P	Field mustard	nucleus	12.54	8.82
Bra029681.1-P	Field mustard	nucleus	15.33	8.78
Bra026413.1-P	Field mustard	nucleus	12.89	8.75
Bra019094.1-P	Field mustard	nucleus	13.24	8.21
Bra025568.1-P	Field mustard	nucleus	12.2	6.42

Protein Annotations

EnsemblPlants:Bra029612.1	EnsemblPlants:Bra029612.1-P	EnsemblPlantsGene:Bra029612	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR44374	PFAM:PF00076	PFscan:PS50102	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI000254809C	UniProt:M4ELE4	MapMan:35.1	:	:	:

Description

AT3G06970 (E=7e-023) | RNA binding / nucleic acid binding / nucleotide binding

Coordinates

chrA05:+:22998958..23001041

Molecular Weight (calculated)

31764.9 Da

IEP (calculated)

4.232

GRAVY (calculated)

-1.148

Length

287 amino acids

Sequence
(BLAST)

001: MSQPNNNNGD DDKRYKKIFV GGLAWSVTTD VLRSFFQENC GEVLEANVVS ETLPDGNLKS KGYGFVTFRD VAAATRACRP PYPDIEGRRT NINLAYVNAK
101: NNPNQTGLNW HQTHSLRPPG MSQPPTEPRF EELPADTNQE AVSTPDVVRN DNNEEVDTET DSGVDQQNGK DQDGEISGQD NSIKLDVKDQ EGEINGQNNG
201: IKQDVKDQEG EINGQDNGIK QDVKNEEGNI VSGEDENTKQ GAGVTNQFCS AINVTLQIET GREEKSENTP QENGFDHEEK TQHRKLD

Best Arabidopsis Sequence Match ( AT3G06970.1 )
(BLAST)

001: MSQTNNHDTR VTKIFVGNLT WRTTADDLRR YFEQFGQVVD ANVVSETYPG RSKGYGFITF RDYVSTVRAL QNSKPIIDGR TTNCNLASAG AKQNMNHPNL
101: NGSFNYVIPP HQYQQAPQHV IPYCPPHTWN HVWGQYIYMY NNNPCYYYPT QMIHNRSDFM THLAWHQTNR RPVIISTPPR SSVQTESISE TDQELIADVA
201: HHDNEEAVTK SDSDVDQQKA KNVKGKNIGQ DGDIKQDARD QEEKINDQED SIKQDVDEEQ NKISGIEKVV ENQEVKIMCE QKHGTKQDED VTKEFDCGIE
301: VTHQDKRVFE EVDEDTP

Arabidopsis Description

RNA recognition motif-containing protein [Source:UniProtKB/TrEMBL;Acc:Q1PES4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.