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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 2
  • mitochondrion 1
  • cytosol 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS4D01G225900.1 Wheat nucleus 96.39 96.39
TraesCS4B01G225300.1 Wheat nucleus 94.38 86.08
HORVU4Hr1G063360.1 Barley nucleus 91.57 83.21
AT5G53720.1 Thale cress cytosol 18.07 45.0
CDY51790 Canola cytosol 18.88 43.93
GSMUA_Achr9P14920_001 Banana plastid 30.92 43.5
CDY28822 Canola cytosol, nucleus, plastid 18.47 41.07
GSMUA_Achr3P06540_001 Banana nucleus, plastid 26.1 40.88
Solyc04g082770.2.1 Tomato cytosol, extracellular, nucleus, plastid 33.73 34.85
TraesCS3A01G389600.1 Wheat nucleus 40.56 34.01
KRH64318 Soybean nucleus 34.94 33.85
KRH53608 Soybean nucleus 33.33 33.74
PGSC0003DMT400025900 Potato nucleus 36.95 32.06
GSMUA_Achr5P05400_001 Banana mitochondrion 33.73 31.82
GSMUA_Achr8P23460_001 Banana nucleus 30.12 31.78
AT5G53680.1 Thale cress cytosol 21.29 31.36
TraesCS7A01G398200.1 Wheat cytosol, mitochondrion, nucleus 34.94 30.74
TraesCS3A01G499100.1 Wheat cytosol, nucleus, plastid 37.75 30.13
AT5G11412.1 Thale cress endoplasmic reticulum 20.88 29.71
TraesCS4A01G106800.2 Wheat cytosol, mitochondrion, nucleus 35.34 29.24
TraesCS6A01G278300.3 Wheat plastid 33.33 28.42
TraesCS7A01G178700.2 Wheat nucleus 32.53 26.64
Bra029612.1-P Field mustard nucleus 21.29 18.47
AT3G06970.1 Thale cress nucleus 21.69 17.03
CDY24657 Canola nucleus 22.49 16.47
CDY05301 Canola nucleus 22.49 15.95
TraesCS6A01G318100.1 Wheat nucleus 30.12 15.4
CDY08023 Canola nucleus 21.69 15.0
CDX74070 Canola cytosol 21.69 15.0
Bra001228.1-P Field mustard cytosol 20.48 14.09
TraesCS7A01G360900.1 Wheat nucleus 21.69 13.47
TraesCS6A01G291100.1 Wheat nucleus 17.67 12.9
TraesCS3A01G220400.1 Wheat nucleus 22.49 12.73
TraesCS6A01G187000.1 Wheat nucleus 20.48 12.35
TraesCS2A01G267500.1 Wheat nucleus 17.27 11.56
TraesCS1A01G150600.1 Wheat nucleus 20.48 11.23
TraesCS4A01G150600.1 Wheat nucleus 20.88 11.23
TraesCS7A01G282600.1 Wheat cytosol 15.26 10.86
TraesCS1A01G234200.1 Wheat cytosol 15.66 10.68
TraesCS3A01G485000.1 Wheat cytosol 14.86 9.92
TraesCS2A01G190400.1 Wheat plastid 20.88 9.79
TraesCS2A01G526400.1 Wheat nucleus 18.88 9.23
TraesCS3A01G181900.1 Wheat nucleus 17.67 9.17
TraesCS5A01G405300.1 Wheat nucleus 12.05 8.36
Protein Annotations
EnsemblPlants:TraesCS4A01G068100.1EnsemblPlantsGene:TraesCS4A01G068100Gene3D:3.30.70.330GO:GO:0003674GO:GO:0003676GO:GO:0005488
InterPro:IPR000504InterPro:IPR012677InterPro:Nucleotide-bd_a/b_plait_sfInterPro:RBD_domain_sfInterPro:RRM_domPANTHER:PTHR44374
PANTHER:PTHR44374:SF3PFAM:PF00076PFscan:PS50102SEG:segSMART:SM00360SUPFAM:SSF54928
TIGR:cd12384MapMan:35.1::::
Description
No Description!
Coordinates
chr4A:+:66605211..66608413
Molecular Weight (calculated)
26831.8 Da
IEP (calculated)
6.627
GRAVY (calculated)
-0.550
Length
249 amino acids
Sequence
(BLAST)
001: MDGDTTFTKL FVGGLAWQTQ RDAMRRYFEQ FGDIAEAVVI ADKHTGRSRG YGFVTFRDPE AAARALQDPT PVIDGRRANC NLAALGASQR AHPAAAAPFG
101: MVRSTPPATS SSSYQSSAAA AIAASYFPQQ AHYAYPYYYG YTGGYSHENM YQMQMSYYGA QGGTSVQQQQ QQQSQVQTYY TAAGPEGAQQ GFSPYYLQQM
201: QAGSNQGQSS SAAVMQYSQM MQYAAHMQQA AHAAGLHSAD APESASDSG
Best Arabidopsis Sequence Match ( AT1G20880.1 )
(BLAST)
001: MAYHSIPSSG FHYLNSPFGD TTFTKVFVGG LAWETQSETL RRHFDQYGDI LEAVVITDKN TGRSKGYGFV TFRDPEAARR ACVDPTPIID GRRANCNLAS
101: LGRSRPPMQY AVIPHAPGRV RPPSPYVGSV QSPRGLHFGS HPYHQPPTYN YQQGVVYPYG VTPYGPDYMY SQSQGFYGPY MGQQYLQVYG VPGAVNSPGY
201: QYGQLSHTIP GAHGYTAGQG YSHPGSHVLQ LGATSPMSAI QSPYPSPSAP THQRVIVQTP PQYIQSSGSD QTTG
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4HUQ5]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.