Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS4D01G225900.1 | Wheat | nucleus | 96.39 | 96.39 |
TraesCS4B01G225300.1 | Wheat | nucleus | 94.38 | 86.08 |
HORVU4Hr1G063360.1 | Barley | nucleus | 91.57 | 83.21 |
AT5G53720.1 | Thale cress | cytosol | 18.07 | 45.0 |
CDY51790 | Canola | cytosol | 18.88 | 43.93 |
GSMUA_Achr9P14920_001 | Banana | plastid | 30.92 | 43.5 |
CDY28822 | Canola | cytosol, nucleus, plastid | 18.47 | 41.07 |
GSMUA_Achr3P06540_001 | Banana | nucleus, plastid | 26.1 | 40.88 |
Solyc04g082770.2.1 | Tomato | cytosol, extracellular, nucleus, plastid | 33.73 | 34.85 |
TraesCS3A01G389600.1 | Wheat | nucleus | 40.56 | 34.01 |
KRH64318 | Soybean | nucleus | 34.94 | 33.85 |
KRH53608 | Soybean | nucleus | 33.33 | 33.74 |
PGSC0003DMT400025900 | Potato | nucleus | 36.95 | 32.06 |
GSMUA_Achr5P05400_001 | Banana | mitochondrion | 33.73 | 31.82 |
GSMUA_Achr8P23460_001 | Banana | nucleus | 30.12 | 31.78 |
AT5G53680.1 | Thale cress | cytosol | 21.29 | 31.36 |
TraesCS7A01G398200.1 | Wheat | cytosol, mitochondrion, nucleus | 34.94 | 30.74 |
TraesCS3A01G499100.1 | Wheat | cytosol, nucleus, plastid | 37.75 | 30.13 |
AT5G11412.1 | Thale cress | endoplasmic reticulum | 20.88 | 29.71 |
TraesCS4A01G106800.2 | Wheat | cytosol, mitochondrion, nucleus | 35.34 | 29.24 |
TraesCS6A01G278300.3 | Wheat | plastid | 33.33 | 28.42 |
TraesCS7A01G178700.2 | Wheat | nucleus | 32.53 | 26.64 |
Bra029612.1-P | Field mustard | nucleus | 21.29 | 18.47 |
AT3G06970.1 | Thale cress | nucleus | 21.69 | 17.03 |
CDY24657 | Canola | nucleus | 22.49 | 16.47 |
CDY05301 | Canola | nucleus | 22.49 | 15.95 |
TraesCS6A01G318100.1 | Wheat | nucleus | 30.12 | 15.4 |
CDY08023 | Canola | nucleus | 21.69 | 15.0 |
CDX74070 | Canola | cytosol | 21.69 | 15.0 |
Bra001228.1-P | Field mustard | cytosol | 20.48 | 14.09 |
TraesCS7A01G360900.1 | Wheat | nucleus | 21.69 | 13.47 |
TraesCS6A01G291100.1 | Wheat | nucleus | 17.67 | 12.9 |
TraesCS3A01G220400.1 | Wheat | nucleus | 22.49 | 12.73 |
TraesCS6A01G187000.1 | Wheat | nucleus | 20.48 | 12.35 |
TraesCS2A01G267500.1 | Wheat | nucleus | 17.27 | 11.56 |
TraesCS1A01G150600.1 | Wheat | nucleus | 20.48 | 11.23 |
TraesCS4A01G150600.1 | Wheat | nucleus | 20.88 | 11.23 |
TraesCS7A01G282600.1 | Wheat | cytosol | 15.26 | 10.86 |
TraesCS1A01G234200.1 | Wheat | cytosol | 15.66 | 10.68 |
TraesCS3A01G485000.1 | Wheat | cytosol | 14.86 | 9.92 |
TraesCS2A01G190400.1 | Wheat | plastid | 20.88 | 9.79 |
TraesCS2A01G526400.1 | Wheat | nucleus | 18.88 | 9.23 |
TraesCS3A01G181900.1 | Wheat | nucleus | 17.67 | 9.17 |
TraesCS5A01G405300.1 | Wheat | nucleus | 12.05 | 8.36 |
Protein Annotations
EnsemblPlants:TraesCS4A01G068100.1 | EnsemblPlantsGene:TraesCS4A01G068100 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | PANTHER:PTHR44374 |
PANTHER:PTHR44374:SF3 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 |
TIGR:cd12384 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr4A:+:66605211..66608413
Molecular Weight (calculated)
26831.8 Da
IEP (calculated)
6.627
GRAVY (calculated)
-0.550
Length
249 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGDTTFTKL FVGGLAWQTQ RDAMRRYFEQ FGDIAEAVVI ADKHTGRSRG YGFVTFRDPE AAARALQDPT PVIDGRRANC NLAALGASQR AHPAAAAPFG
101: MVRSTPPATS SSSYQSSAAA AIAASYFPQQ AHYAYPYYYG YTGGYSHENM YQMQMSYYGA QGGTSVQQQQ QQQSQVQTYY TAAGPEGAQQ GFSPYYLQQM
201: QAGSNQGQSS SAAVMQYSQM MQYAAHMQQA AHAAGLHSAD APESASDSG
101: MVRSTPPATS SSSYQSSAAA AIAASYFPQQ AHYAYPYYYG YTGGYSHENM YQMQMSYYGA QGGTSVQQQQ QQQSQVQTYY TAAGPEGAQQ GFSPYYLQQM
201: QAGSNQGQSS SAAVMQYSQM MQYAAHMQQA AHAAGLHSAD APESASDSG
001: MAYHSIPSSG FHYLNSPFGD TTFTKVFVGG LAWETQSETL RRHFDQYGDI LEAVVITDKN TGRSKGYGFV TFRDPEAARR ACVDPTPIID GRRANCNLAS
101: LGRSRPPMQY AVIPHAPGRV RPPSPYVGSV QSPRGLHFGS HPYHQPPTYN YQQGVVYPYG VTPYGPDYMY SQSQGFYGPY MGQQYLQVYG VPGAVNSPGY
201: QYGQLSHTIP GAHGYTAGQG YSHPGSHVLQ LGATSPMSAI QSPYPSPSAP THQRVIVQTP PQYIQSSGSD QTTG
101: LGRSRPPMQY AVIPHAPGRV RPPSPYVGSV QSPRGLHFGS HPYHQPPTYN YQQGVVYPYG VTPYGPDYMY SQSQGFYGPY MGQQYLQVYG VPGAVNSPGY
201: QYGQLSHTIP GAHGYTAGQG YSHPGSHVLQ LGATSPMSAI QSPYPSPSAP THQRVIVQTP PQYIQSSGSD QTTG
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4HUQ5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.