Factsheet for TraesCS3A01G220400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

nucleus: 26228564

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G250700.1	Wheat	golgi	99.09	99.09
TraesCS3D01G232300.1	Wheat	nucleus	98.18	98.18
HORVU3Hr1G053990.1	Barley	nucleus	97.73	97.51
Os01t0614500-01	Rice	nucleus	87.95	86.58
EES03272	Sorghum	nucleus	86.14	85.17
Zm00001d011336_P002	Maize	nucleus	84.77	83.26
Zm00001d044469_P003	Maize	nucleus	83.41	82.1
GSMUA_Achr5P09550_001	Banana	nucleus	48.86	57.8
GSMUA_Achr5P09540_001	Banana	nucleus	46.14	52.32
VIT_19s0014g01570.t01	Wine grape	nucleus	52.27	51.22
CDY26001	Canola	nucleus	46.36	50.12
CDY25867	Canola	nucleus	45.91	49.88
CDY55846	Canola	nucleus	45.45	49.88
KRH26210	Soybean	nucleus	49.32	49.66
KRH55109	Soybean	nucleus	50.0	49.55
Bra038113.1-P	Field mustard	nucleus	46.36	49.28
Bra039664.1-P	Field mustard	nucleus	46.36	49.16
CDY24106	Canola	nucleus	46.14	49.15
AT3G15010.2	Thale cress	nucleus	44.32	48.27
KRH50169	Soybean	nucleus	40.68	46.61
PGSC0003DMT400039802	Potato	nucleus	46.59	45.96
PGSC0003DMT400008213	Potato	nucleus	44.09	45.75
KRH71299	Soybean	nucleus	39.77	45.57
Solyc02g021560.2.1	Tomato	nucleus	44.32	45.24
Solyc12g014210.1.1	Tomato	nucleus	34.09	44.78
PGSC0003DMT400032256	Potato	nucleus	24.77	34.94
PGSC0003DMT400031324	Potato	cytosol	10.23	32.37
PGSC0003DMT400031418	Potato	extracellular, golgi	24.09	29.12
TraesCS3A01G181900.1	Wheat	nucleus	30.68	28.12
TraesCS2A01G526400.1	Wheat	nucleus	32.5	28.09
TraesCS7A01G398200.1	Wheat	cytosol, mitochondrion, nucleus	15.45	24.03
TraesCS7A01G360900.1	Wheat	nucleus	21.36	23.44
TraesCS6A01G187000.1	Wheat	nucleus	21.14	22.52
TraesCS4A01G068100.1	Wheat	nucleus	12.73	22.49
TraesCS6A01G278300.3	Wheat	plastid	14.77	22.26
TraesCS3A01G389600.1	Wheat	nucleus	14.32	21.21
TraesCS7A01G282600.1	Wheat	cytosol	15.91	20.0
TraesCS6A01G291100.1	Wheat	nucleus	15.45	19.94
TraesCS4A01G106800.2	Wheat	cytosol, mitochondrion, nucleus	13.41	19.6
TraesCS3A01G499100.1	Wheat	cytosol, nucleus, plastid	13.41	18.91
TraesCS7A01G178700.2	Wheat	nucleus	12.95	18.75
TraesCS4A01G150600.1	Wheat	nucleus	19.32	18.36
TraesCS3A01G485000.1	Wheat	cytosol	15.23	17.96
TraesCS1A01G150600.1	Wheat	nucleus	18.18	17.62
TraesCS1A01G234200.1	Wheat	cytosol	14.32	17.26
TraesCS2A01G267500.1	Wheat	nucleus	14.55	17.2
TraesCS5A01G405300.1	Wheat	nucleus	12.95	15.88
TraesCS2A01G190400.1	Wheat	plastid	18.86	15.63
TraesCS6A01G318100.1	Wheat	nucleus	13.41	12.12

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0006950	GO:GO:0006952	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008219
GO:GO:0009058	GO:GO:0009693	GO:GO:0009987	GO:GO:0010150	InterPro:IPR000504	InterPro:IPR012677
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44678	PANTHER:PTHR44678:SF2	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	EnsemblPlantsGene:TraesCS3A01G220400	EnsemblPlants:TraesCS3A01G220400.1	TIGR:cd12384
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3A:-:406298987..406300309

Molecular Weight (calculated)

43951.1 Da

IEP (calculated)

8.793

GRAVY (calculated)

-0.237

Length

440 amino acids

Sequence
(BLAST)

001: MDPFSKKRKP DENGAVAASP AAGAAALGLT RDDVLRLLDP LSRDQLADIA AAAALASGVA LDAVRAAADR DPALRKLFVR GLGWETNSDS LRAIFSAYGD
101: LEEAVVISDK TTGRSKGYGF VTFRHADSAL LALKEPSKKI DARVTVTQLA AAGAAGGPSG GTTGAGGVPS ADVSLRKIFV GNVPADMPSE RLLAHFASYG
201: EIEEGPLGFD KLTGKFRGFA LFVYKTPEGA QASLVDSTKV IDGQQLLCKL AIEGKKGKQQ PQQSGPAGQQ QPQMLQGGPP DMTGSGLGLG GPQMGGQYGG
301: PGNGMPSFGA FGGPNPYANM PSSMGGGGGA GLGSMGNPMH SGMGSAGAGG FGAGGLGGGS FGGSSQFGAA GMGPYGGLGM GGPSSLYRMQ QGSGGLPSGY
401: GEGGNYPLPG SGFRGQDPQG MSPGPGGRAP PMYPNVPPYF

Best Arabidopsis Sequence Match ( AT3G15010.2 )
(BLAST)

001: MDMMKKRKLD ENGNGLNTNG GGTIGPTRLS PQDARKIIER FTTDQLLDLL QEAIVRHPDV LESVRLTADS DISQRKLFIR GLAADTTTEG LRSLFSSYGD
101: LEEAIVILDK VTGKSKGYGF VTFMHVDGAL LALKEPSKKI DGRVTVTQLA ASGNQGTGSQ IADISMRKIY VANVPFDMPA DRLLNHFMAY GDVEEGPLGF
201: DKVTGKSRGF ALFVYKTAEG AQAALADPVK VIDGKHLNCK LAVDGKKGGK PGMPQAQDGG SGHGHVHGEG MGMVRPAGPY GAAGGISAYG GYSGGPPAHH
301: MNSTHSSMGV GSAGYGGHYG GYGGPGGTGV YGGLGGGYGG PGTGSGQYRM PPSSMPGGGG YPESGHYGLS SSAGYPGQHH QAVGTSPVPR VPHGGMYPNG
401: PPNY

Arabidopsis Description

UBA2CUBP1-associated protein 2C [Source:UniProtKB/Swiss-Prot;Acc:Q9LKA4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.