Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr5P09550_001 | Banana | nucleus | 78.61 | 81.99 |
| CDY55846 | Canola | nucleus | 54.64 | 52.87 |
| CDY26001 | Canola | nucleus | 55.15 | 52.58 |
| CDY25867 | Canola | nucleus | 54.38 | 52.1 |
| AT3G15010.2 | Thale cress | nucleus | 53.87 | 51.73 |
| Bra039664.1-P | Field mustard | nucleus | 55.15 | 51.57 |
| CDY24106 | Canola | nucleus | 54.64 | 51.33 |
| Bra038113.1-P | Field mustard | nucleus | 54.64 | 51.21 |
| VIT_19s0014g01570.t01 | Wine grape | nucleus | 57.47 | 49.67 |
| KRH26210 | Soybean | nucleus | 53.87 | 47.83 |
| KRH55109 | Soybean | nucleus | 53.35 | 46.62 |
| TraesCS3D01G232300.1 | Wheat | nucleus | 52.84 | 46.59 |
| HORVU3Hr1G053990.1 | Barley | nucleus | 52.84 | 46.49 |
| TraesCS3B01G250700.1 | Wheat | golgi | 52.58 | 46.36 |
| Os01t0614500-01 | Rice | nucleus | 53.35 | 46.31 |
| TraesCS3A01G220400.1 | Wheat | nucleus | 52.32 | 46.14 |
| Solyc12g014210.1.1 | Tomato | nucleus | 39.43 | 45.67 |
| EES03272 | Sorghum | nucleus | 51.55 | 44.94 |
| Zm00001d011336_P002 | Maize | nucleus | 51.29 | 44.42 |
| PGSC0003DMT400039802 | Potato | nucleus | 50.77 | 44.17 |
| Zm00001d044469_P003 | Maize | nucleus | 50.77 | 44.07 |
| KRH71299 | Soybean | nucleus | 43.3 | 43.75 |
| KRH50169 | Soybean | nucleus | 43.3 | 43.75 |
| PGSC0003DMT400008213 | Potato | nucleus | 47.68 | 43.63 |
| Solyc02g021560.2.1 | Tomato | nucleus | 47.68 | 42.92 |
| GSMUA_Achr5P17700_001 | Banana | cytosol | 8.76 | 36.56 |
| GSMUA_Achr9P12410_001 | Banana | nucleus | 31.19 | 36.12 |
| PGSC0003DMT400032256 | Potato | nucleus | 27.84 | 34.62 |
| PGSC0003DMT400031324 | Potato | cytosol | 12.37 | 34.53 |
| GSMUA_Achr10P... | Banana | nucleus | 18.3 | 30.74 |
| PGSC0003DMT400031418 | Potato | extracellular, golgi | 27.84 | 29.67 |
| GSMUA_Achr3P06540_001 | Banana | nucleus, plastid | 12.11 | 29.56 |
| GSMUA_Achr4P09830_001 | Banana | mitochondrion | 11.34 | 29.14 |
| GSMUA_Achr9P14920_001 | Banana | plastid | 13.14 | 28.81 |
| GSMUA_Achr6P15950_001 | Banana | nucleus | 34.28 | 28.54 |
| GSMUA_AchrUn_... | Banana | nucleus | 31.19 | 28.21 |
| GSMUA_Achr10P... | Banana | mitochondrion, nucleus | 31.19 | 27.88 |
| GSMUA_Achr4P09210_001 | Banana | nucleus | 31.7 | 27.83 |
| GSMUA_Achr7P00730_001 | Banana | cytosol | 12.11 | 25.97 |
| GSMUA_Achr8P08440_001 | Banana | nucleus | 15.21 | 22.78 |
| GSMUA_Achr11P... | Banana | nucleus | 15.46 | 22.64 |
| GSMUA_Achr10P... | Banana | nucleus | 15.72 | 22.51 |
| GSMUA_Achr10P... | Banana | nucleus | 14.18 | 22.18 |
| GSMUA_Achr3P21850_001 | Banana | nucleus | 14.95 | 22.14 |
| GSMUA_Achr4P32300_001 | Banana | nucleus | 8.25 | 21.77 |
| GSMUA_Achr8P24330_001 | Banana | nucleus, plastid | 16.24 | 21.72 |
| GSMUA_AchrUn_... | Banana | cytosol | 18.3 | 21.58 |
| GSMUA_Achr6P17510_001 | Banana | cytosol, mitochondrion, nucleus | 14.95 | 21.48 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 12.89 | 20.75 |
| GSMUA_Achr1P19260_001 | Banana | nucleus | 17.78 | 20.41 |
| GSMUA_Achr8P23460_001 | Banana | nucleus | 12.37 | 20.34 |
| GSMUA_Achr1P09440_001 | Banana | cytosol | 17.53 | 20.06 |
| GSMUA_Achr5P05400_001 | Banana | mitochondrion | 13.4 | 19.7 |
| GSMUA_Achr10P... | Banana | nucleus | 16.75 | 19.52 |
| GSMUA_Achr7P13480_001 | Banana | nucleus | 16.75 | 19.29 |
| GSMUA_Achr3P13820_001 | Banana | cytosol | 13.4 | 18.64 |
| GSMUA_Achr9P12880_001 | Banana | cytosol | 10.82 | 18.26 |
| GSMUA_Achr8P25380_001 | Banana | nucleus | 17.78 | 18.21 |
| GSMUA_Achr10P... | Banana | nucleus | 17.78 | 15.68 |
| GSMUA_Achr4P33100_001 | Banana | nucleus | 17.78 | 15.61 |
| GSMUA_Achr2P14710_001 | Banana | cytosol | 14.43 | 15.6 |
| GSMUA_Achr10P... | Banana | nucleus | 17.27 | 14.57 |
| GSMUA_Achr1P10970_001 | Banana | nucleus | 16.24 | 14.45 |
| GSMUA_Achr6P10970_001 | Banana | nucleus | 18.04 | 14.0 |
| GSMUA_Achr4P28100_001 | Banana | nucleus | 15.46 | 13.57 |
| GSMUA_Achr4P24260_001 | Banana | cytosol | 11.34 | 13.37 |
| GSMUA_Achr5P17690_001 | Banana | nucleus | 10.05 | 9.65 |
| GSMUA_Achr3P02300_001 | Banana | nucleus | 16.24 | 9.28 |
| GSMUA_Achr6P24180_001 | Banana | cytosol | 14.95 | 8.7 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr5P09540_001 | EnsemblPlants:GSMUA_Achr5T09540_001 | EnsemblPlantsGene:GSMUA_Achr5G09540_001 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | PANTHER:PTHR44678 | PANTHER:PTHR44678:SF2 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000295E9FF | UniProt:M0SX33 | MapMan:35.1 | : |
Description
Putative uncharacterized protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G09540_001]
Coordinates
chr5:+:6832239..6838349
Molecular Weight (calculated)
40494.3 Da
IEP (calculated)
8.058
GRAVY (calculated)
-0.169
Length
388 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPSYKKRKA DENGALATAI PAAELTPEDG RKIIDAFSLD QLRDIVAAAV SRGEPGVLDD VRAIADRDQS QRKLFIRGLG METTTDAVRS LFSTYGEIEE
101: AAVIVDRATG KSKGYGFITF RHIDGALRAL KEPSKKIDGR MTVTQLAAAG NSGSGAAPSA DVSLRKIYVA NVPADMPSDR LLAHFSSYGE IEEGPLGFDK
201: QTGKFRGFAL FVYMTVEGAK NSLVDPNKNI DGHNLVCKLA IEGKKGKPGA PAPGSGLGSY GGYSGSALPG AAGLSHHHNM NSSLPSSMGP GTPGLSSYGG
301: PGSGGYGGYG MGSSLYRMPP SSVGMPSGGY PEGFQVEGYI LMCHLITKVY GNFGGNALNG SAEFRLLSVL MNGLQTFVAT SLLLCSGM
101: AAVIVDRATG KSKGYGFITF RHIDGALRAL KEPSKKIDGR MTVTQLAAAG NSGSGAAPSA DVSLRKIYVA NVPADMPSDR LLAHFSSYGE IEEGPLGFDK
201: QTGKFRGFAL FVYMTVEGAK NSLVDPNKNI DGHNLVCKLA IEGKKGKPGA PAPGSGLGSY GGYSGSALPG AAGLSHHHNM NSSLPSSMGP GTPGLSSYGG
301: PGSGGYGGYG MGSSLYRMPP SSVGMPSGGY PEGFQVEGYI LMCHLITKVY GNFGGNALNG SAEFRLLSVL MNGLQTFVAT SLLLCSGM
001: MDMMKKRKLD ENGNGLNTNG GGTIGPTRLS PQDARKIIER FTTDQLLDLL QEAIVRHPDV LESVRLTADS DISQRKLFIR GLAADTTTEG LRSLFSSYGD
101: LEEAIVILDK VTGKSKGYGF VTFMHVDGAL LALKEPSKKI DGRVTVTQLA ASGNQGTGSQ IADISMRKIY VANVPFDMPA DRLLNHFMAY GDVEEGPLGF
201: DKVTGKSRGF ALFVYKTAEG AQAALADPVK VIDGKHLNCK LAVDGKKGGK PGMPQAQDGG SGHGHVHGEG MGMVRPAGPY GAAGGISAYG GYSGGPPAHH
301: MNSTHSSMGV GSAGYGGHYG GYGGPGGTGV YGGLGGGYGG PGTGSGQYRM PPSSMPGGGG YPESGHYGLS SSAGYPGQHH QAVGTSPVPR VPHGGMYPNG
401: PPNY
101: LEEAIVILDK VTGKSKGYGF VTFMHVDGAL LALKEPSKKI DGRVTVTQLA ASGNQGTGSQ IADISMRKIY VANVPFDMPA DRLLNHFMAY GDVEEGPLGF
201: DKVTGKSRGF ALFVYKTAEG AQAALADPVK VIDGKHLNCK LAVDGKKGGK PGMPQAQDGG SGHGHVHGEG MGMVRPAGPY GAAGGISAYG GYSGGPPAHH
301: MNSTHSSMGV GSAGYGGHYG GYGGPGGTGV YGGLGGGYGG PGTGSGQYRM PPSSMPGGGG YPESGHYGLS SSAGYPGQHH QAVGTSPVPR VPHGGMYPNG
401: PPNY
Arabidopsis Description
UBA2CUBP1-associated protein 2C [Source:UniProtKB/Swiss-Prot;Acc:Q9LKA4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.