Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr1P04410_001 | |
| GSMUA_Achr7P21160_001 | |
| GSMUA_AchrUn_... |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G33470.1 | GSMUA_Achr1P04410_001 | AT3G56680.1 | 21798944 |
| AT1G33470.1 | GSMUA_Achr7P21160_001 | AT3G56680.1 | 21798944 |
| AT1G33470.1 | GSMUA_AchrUn_... | AT3G56680.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH75298 | Soybean | cytosol, nucleus | 11.84 | 79.8 |
| KRH13261 | Soybean | cytosol | 13.64 | 73.39 |
| GSMUA_Achr10P... | Banana | nucleus | 25.04 | 61.62 |
| KRH40033 | Soybean | nucleus | 24.89 | 61.03 |
| KRH23771 | Soybean | nucleus | 24.74 | 60.66 |
| VIT_18s0089g00920.t01 | Wine grape | nucleus | 24.14 | 59.85 |
| GSMUA_Achr6P17510_001 | Banana | cytosol, mitochondrion, nucleus | 24.14 | 59.63 |
| EES01849 | Sorghum | nucleus | 23.24 | 59.16 |
| PGSC0003DMT400008944 | Potato | nucleus | 22.79 | 57.58 |
| Solyc11g044470.1.1 | Tomato | mitochondrion, nucleus, plastid | 22.19 | 56.7 |
| GSMUA_Achr3P21850_001 | Banana | nucleus | 22.04 | 56.11 |
| TraesCS3B01G419200.1 | Wheat | nucleus | 24.59 | 55.41 |
| Os01t0876800-00 | Rice | nucleus | 24.89 | 55.33 |
| Zm00001d042641_P001 | Maize | nucleus | 24.44 | 55.25 |
| TraesCS3D01G380100.1 | Wheat | nucleus | 24.44 | 55.07 |
| TraesCS3A01G389600.1 | Wheat | nucleus | 24.44 | 54.88 |
| GSMUA_Achr8P08440_001 | Banana | nucleus | 21.14 | 54.44 |
| GSMUA_Achr4P09830_001 | Banana | mitochondrion | 12.29 | 54.3 |
| Zm00001d012238_P003 | Maize | nucleus, plasma membrane, plastid | 24.14 | 47.35 |
| CDY69197 | Canola | nucleus | 15.74 | 46.67 |
| GSMUA_Achr9P14920_001 | Banana | plastid | 12.14 | 45.76 |
| GSMUA_Achr3P06540_001 | Banana | nucleus, plastid | 10.79 | 45.28 |
| Bra024547.1-P | Field mustard | nucleus | 16.19 | 45.19 |
| CDY04769 | Canola | nucleus | 15.89 | 44.73 |
| Bra012350.1-P | Field mustard | nucleus | 16.19 | 43.37 |
| CDY25759 | Canola | nucleus | 16.04 | 42.97 |
| KRH62942 | Soybean | mitochondrion | 13.04 | 42.65 |
| CDX73279 | Canola | cytosol | 15.29 | 42.15 |
| AT1G33470.1 | Thale cress | cytosol | 14.99 | 40.82 |
| Os01t0958500-01 | Rice | nucleus | 17.99 | 38.71 |
| HORVU3Hr1G110370.1 | Barley | cytosol, mitochondrion, nucleus | 17.54 | 37.38 |
| TraesCS3A01G499100.1 | Wheat | cytosol, nucleus, plastid | 17.39 | 37.18 |
| TraesCS3B01G562300.3 | Wheat | mitochondrion | 17.39 | 37.18 |
| GSMUA_Achr8P24330_001 | Banana | nucleus, plastid | 16.04 | 36.9 |
| TraesCS3D01G505900.1 | Wheat | mitochondrion | 17.39 | 36.71 |
| EES02078 | Sorghum | nucleus | 18.29 | 36.09 |
| Bra010203.1-P | Field mustard | nucleus | 16.19 | 35.41 |
| Zm00001d042042_P001 | Maize | nucleus | 17.84 | 35.0 |
| CDY67263 | Canola | nucleus | 16.94 | 34.45 |
| GSMUA_Achr5P17700_001 | Banana | cytosol | 4.8 | 34.41 |
| AT1G22910.3 | Thale cress | nucleus | 17.54 | 33.72 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 11.99 | 33.2 |
| GSMUA_Achr8P23460_001 | Banana | nucleus | 11.54 | 32.63 |
| GSMUA_Achr11P... | Banana | nucleus | 12.89 | 32.45 |
| GSMUA_Achr5P05400_001 | Banana | mitochondrion | 12.29 | 31.06 |
| GSMUA_Achr3P13820_001 | Banana | cytosol | 12.74 | 30.47 |
| CDY13339 | Canola | mitochondrion | 5.4 | 21.43 |
| CDY21399 | Canola | mitochondrion | 4.65 | 21.38 |
| GSMUA_Achr4P32300_001 | Banana | nucleus | 4.65 | 21.09 |
| GSMUA_Achr10P... | Banana | nucleus | 7.05 | 20.35 |
| GSMUA_Achr7P00730_001 | Banana | cytosol | 5.25 | 19.34 |
| GSMUA_Achr10P... | Banana | nucleus | 6.45 | 17.34 |
| GSMUA_Achr10P... | Banana | nucleus | 7.95 | 15.92 |
| GSMUA_Achr7P13480_001 | Banana | nucleus | 7.95 | 15.73 |
| GSMUA_Achr5P09550_001 | Banana | nucleus | 8.55 | 15.32 |
| GSMUA_Achr9P12410_001 | Banana | nucleus | 7.65 | 15.22 |
| GSMUA_Achr9P12880_001 | Banana | cytosol | 5.25 | 15.22 |
| GSMUA_Achr5P09540_001 | Banana | nucleus | 8.7 | 14.95 |
| GSMUA_Achr1P19260_001 | Banana | nucleus | 7.5 | 14.79 |
| GSMUA_Achr1P09440_001 | Banana | cytosol | 7.35 | 14.45 |
| GSMUA_AchrUn_... | Banana | cytosol | 7.05 | 14.29 |
| GSMUA_Achr8P25380_001 | Banana | nucleus | 7.5 | 13.19 |
| GSMUA_Achr10P... | Banana | nucleus | 8.7 | 13.18 |
| GSMUA_Achr4P33100_001 | Banana | nucleus | 8.55 | 12.9 |
| GSMUA_Achr10P... | Banana | nucleus | 8.55 | 12.39 |
| GSMUA_Achr1P10970_001 | Banana | nucleus | 7.95 | 12.16 |
| GSMUA_Achr2P14710_001 | Banana | cytosol | 6.45 | 11.98 |
| GSMUA_AchrUn_... | Banana | nucleus | 7.5 | 11.65 |
| GSMUA_Achr10P... | Banana | mitochondrion, nucleus | 7.35 | 11.29 |
| GSMUA_Achr4P09210_001 | Banana | nucleus | 7.2 | 10.86 |
| GSMUA_Achr6P15950_001 | Banana | nucleus | 7.35 | 10.52 |
| GSMUA_Achr4P28100_001 | Banana | nucleus | 6.9 | 10.41 |
| GSMUA_Achr6P10970_001 | Banana | nucleus | 7.65 | 10.2 |
| GSMUA_Achr4P24260_001 | Banana | cytosol | 4.65 | 9.42 |
| GSMUA_Achr3P02300_001 | Banana | nucleus | 7.95 | 7.81 |
| GSMUA_Achr5P17690_001 | Banana | nucleus | 3.9 | 6.44 |
Protein Annotations
| MapMan:19.4.2.4 | Gene3D:2.30.130.40 | Gene3D:3.30.70.330 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSMUA_Achr6G24180_001 | EnsemblPlants:GSMUA_Achr6P24180_001 | EnsemblPlants:GSMUA_Achr6T24180_001 | InterPro:IPR000504 |
| InterPro:IPR003111 | InterPro:IPR012677 | InterPro:Lon_substr-bd | UniProt:M0T9R4 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| PFAM:PF02190 | PFscan:PS50102 | PFscan:PS51787 | PANTHER:PTHR23327 | PANTHER:PTHR23327:SF22 | InterPro:PUA-like_sf |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | SUPFAM:SSF88697 | UniParc:UPI000295FB7B |
| SEG:seg | : | : | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G24180_001]
Coordinates
chr6:+:24600596..24613747
Molecular Weight (calculated)
74549.6 Da
IEP (calculated)
9.540
GRAVY (calculated)
-0.202
Length
667 amino acids
Sequence
(BLAST)
(BLAST)
001: MSPPNVAGQF GDTTYTKVFV GGLAWETQRD TMRKYFEQFG DILEAVVIND KNTGRSKGYG FVTFREPEAA MRACLDPSPV IDGRRANCNL ASLGVQRSRP
101: TTPLHGGSRN FRAMKSFQAA GGIQGGMGTA FPSPAATFPA HYAIQQGLPY YVYGFSPYSA DYNYPTFFIT PMCSQSCHLL LQHVWWSVCS ISTLWWGNNW
201: YGGRSHWLLP ILPVWAGWWR HLHRRRVRPG PRIWHAVPSD VPILCCHHDG GGDERLWSPT LWSGHLPRTE PHSTSRHDHG SHSSKPAKSD CSPLQTHSFP
301: LHCDYSARAT LGLTMVLLHT SSVLFLHVSF LFNSLSAWIY MYTPPYPDKS SRPLPRTERA SSIYLPMSLR SLSLAPSPRL LLNPIPAPRS RSLCSSGFPR
401: TGSSQLGRWF RRCSSSSVSG SSSSLDLPLL PFQMNEVLIP SESKTLHLYE ARYLALLEES LSRKKLFVHF VLDPVRSSIS SSGASYAARY GCLVAIESVK
501: RLEIGALVSI RGISRVNIIE LMQMEPYLRG LVVPMLDNVS GQEKELEQKL LELTEYLVSL HNLQIKLKAS KEELLQTRTT NSMAWAQREG FGDCDQAFIP
601: KLAERISFAG LQPVSGMTGS ELLALQKEKL RAMDLRDTLK RVDYGIQFTN KSISMVAAKL AIQSLET
101: TTPLHGGSRN FRAMKSFQAA GGIQGGMGTA FPSPAATFPA HYAIQQGLPY YVYGFSPYSA DYNYPTFFIT PMCSQSCHLL LQHVWWSVCS ISTLWWGNNW
201: YGGRSHWLLP ILPVWAGWWR HLHRRRVRPG PRIWHAVPSD VPILCCHHDG GGDERLWSPT LWSGHLPRTE PHSTSRHDHG SHSSKPAKSD CSPLQTHSFP
301: LHCDYSARAT LGLTMVLLHT SSVLFLHVSF LFNSLSAWIY MYTPPYPDKS SRPLPRTERA SSIYLPMSLR SLSLAPSPRL LLNPIPAPRS RSLCSSGFPR
401: TGSSQLGRWF RRCSSSSVSG SSSSLDLPLL PFQMNEVLIP SESKTLHLYE ARYLALLEES LSRKKLFVHF VLDPVRSSIS SSGASYAARY GCLVAIESVK
501: RLEIGALVSI RGISRVNIIE LMQMEPYLRG LVVPMLDNVS GQEKELEQKL LELTEYLVSL HNLQIKLKAS KEELLQTRTT NSMAWAQREG FGDCDQAFIP
601: KLAERISFAG LQPVSGMTGS ELLALQKEKL RAMDLRDTLK RVDYGIQFTN KSISMVAAKL AIQSLET
001: MLFSTAELNG ESLNPITAIH IFPMTSTLIS SNLSSSFFPT QNIHRIRIPT TSIPGSFNIR ARRSKIVAKS LDLPLLPFSM SEVLVPTESK TLHLYEARYL
101: ALLEESMKRK KNMFVHFILD PISISETATE ASFAARYGCL VLIENVERLD VGALVSIRGA GRVKISRFLG ADPYLSGEVR PIQDRMNYES SNELTSKISQ
201: LKESIKNLNS LEIKLKAPAD SPLQTRLINS LNWAEDEPPV DFDESFVPSL QERLSFSAFQ PISGSTKSEL SRLQQEKIKA MDMKDTIERL ELSMGLIKEN
301: ISSIAAKLAI QSLDIR
101: ALLEESMKRK KNMFVHFILD PISISETATE ASFAARYGCL VLIENVERLD VGALVSIRGA GRVKISRFLG ADPYLSGEVR PIQDRMNYES SNELTSKISQ
201: LKESIKNLNS LEIKLKAPAD SPLQTRLINS LNWAEDEPPV DFDESFVPSL QERLSFSAFQ PISGSTKSEL SRLQQEKIKA MDMKDTIERL ELSMGLIKEN
301: ISSIAAKLAI QSLDIR
Arabidopsis Description
ATP-dependent protease La (LON) domain protein [Source:UniProtKB/TrEMBL;Acc:Q682J5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.