Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G33470.1 | KRG95052 | AT3G56680.1 | 21798944 |
| AT1G33470.1 | KRH33128 | AT3G56680.1 | 21798944 |
| AT1G33470.1 | KRH33305 | AT3G56680.1 | 21798944 |
| AT1G33470.1 | KRH66702 | AT3G56680.1 | 21798944 |
| AT1G33470.1 | KRH71688 | AT3G56680.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH75298 | Soybean | cytosol, nucleus | 69.35 | 86.87 |
| KRH62942 | Soybean | mitochondrion | 75.0 | 45.59 |
| KRH23771 | Soybean | nucleus | 87.9 | 40.07 |
| KRH40033 | Soybean | nucleus | 87.9 | 40.07 |
| VIT_18s0089g00920.t01 | Wine grape | nucleus | 84.68 | 39.03 |
| EES01849 | Sorghum | nucleus | 79.03 | 37.4 |
| Solyc11g044470.1.1 | Tomato | mitochondrion, nucleus, plastid | 78.23 | 37.16 |
| PGSC0003DMT400008944 | Potato | nucleus | 79.03 | 37.12 |
| CDY69197 | Canola | nucleus | 66.94 | 36.89 |
| GSMUA_Achr6P17510_001 | Banana | cytosol, mitochondrion, nucleus | 76.61 | 35.19 |
| GSMUA_Achr10P... | Banana | nucleus | 76.61 | 35.06 |
| CDY04769 | Canola | nucleus | 66.94 | 35.02 |
| GSMUA_Achr8P08440_001 | Banana | nucleus | 72.58 | 34.75 |
| Bra024547.1-P | Field mustard | nucleus | 66.94 | 34.73 |
| GSMUA_Achr3P21850_001 | Banana | nucleus | 70.97 | 33.59 |
| Zm00001d042641_P001 | Maize | nucleus | 79.03 | 33.22 |
| CDY25759 | Canola | nucleus | 66.13 | 32.93 |
| Bra012350.1-P | Field mustard | nucleus | 66.13 | 32.93 |
| TraesCS3B01G419200.1 | Wheat | nucleus | 78.23 | 32.77 |
| TraesCS3D01G380100.1 | Wheat | nucleus | 78.23 | 32.77 |
| Os01t0876800-00 | Rice | nucleus | 79.03 | 32.67 |
| TraesCS3A01G389600.1 | Wheat | nucleus | 78.23 | 32.66 |
| AT1G33470.1 | Thale cress | cytosol | 62.1 | 31.43 |
| CDX73279 | Canola | cytosol | 61.29 | 31.41 |
| KRH51553 | Soybean | nucleus, plastid | 66.13 | 28.67 |
| KRH07772 | Soybean | cytosol | 22.58 | 28.57 |
| Zm00001d012238_P003 | Maize | nucleus, plasma membrane, plastid | 78.23 | 28.53 |
| KRH60871 | Soybean | nucleus, plastid | 65.32 | 28.32 |
| KRH53608 | Soybean | nucleus | 54.84 | 27.64 |
| KRH64318 | Soybean | nucleus | 56.45 | 27.24 |
| KRH16743 | Soybean | nucleus | 58.87 | 26.64 |
| Os01t0958500-01 | Rice | nucleus | 66.13 | 26.45 |
| KRH18921 | Soybean | nucleus | 58.87 | 26.45 |
| KRH47819 | Soybean | nucleus | 60.48 | 25.34 |
| CDY67263 | Canola | nucleus | 66.13 | 25.0 |
| Bra010203.1-P | Field mustard | nucleus | 61.29 | 24.92 |
| KRH06384 | Soybean | nucleus | 60.48 | 24.92 |
| KRH06373 | Soybean | nucleus | 55.65 | 24.91 |
| AT1G22910.3 | Thale cress | nucleus | 69.35 | 24.78 |
| KRH47731 | Soybean | nucleus | 53.23 | 24.72 |
| TraesCS3A01G499100.1 | Wheat | cytosol, nucleus, plastid | 62.1 | 24.68 |
| TraesCS3B01G562300.3 | Wheat | mitochondrion | 61.29 | 24.36 |
| HORVU3Hr1G110370.1 | Barley | cytosol, mitochondrion, nucleus | 61.29 | 24.28 |
| TraesCS3D01G505900.1 | Wheat | mitochondrion | 61.29 | 24.05 |
| EES02078 | Sorghum | nucleus | 65.32 | 23.96 |
| KRH53044 | Soybean | nucleus | 54.84 | 23.69 |
| Zm00001d042042_P001 | Maize | nucleus | 64.52 | 23.53 |
| KRH47808 | Soybean | nucleus | 54.03 | 23.43 |
| KRH06306 | Soybean | nucleus | 50.81 | 23.42 |
| KRH62327 | Soybean | nucleus | 54.03 | 23.34 |
| KRH56541 | Soybean | nucleus | 24.19 | 15.0 |
| GSMUA_Achr6P24180_001 | Banana | cytosol | 73.39 | 13.64 |
| KRH71299 | Soybean | nucleus | 41.13 | 13.28 |
| KRG95365 | Soybean | nucleus | 34.68 | 12.8 |
| KRH50169 | Soybean | nucleus | 39.52 | 12.76 |
| KRH67043 | Soybean | nucleus | 34.68 | 12.65 |
| KRH17717 | Soybean | nucleus | 28.23 | 9.94 |
| KRH55109 | Soybean | nucleus | 34.68 | 9.68 |
| KRH23293 | Soybean | nucleus | 27.42 | 9.63 |
| KRH26210 | Soybean | nucleus | 33.87 | 9.61 |
| KRH07154 | Soybean | nucleus | 27.42 | 9.14 |
| KRG94084 | Soybean | nucleus | 27.42 | 9.09 |
| KRH52137 | Soybean | nucleus | 27.42 | 8.99 |
| KRH61448 | Soybean | nucleus | 27.42 | 8.85 |
| KRG93213 | Soybean | nucleus | 26.61 | 8.75 |
| KRH73860 | Soybean | nucleus | 32.26 | 8.39 |
| KRH14284 | Soybean | nucleus | 32.26 | 8.37 |
| KRG98573 | Soybean | nucleus | 31.45 | 8.14 |
| KRG94993 | Soybean | nucleus | 30.65 | 7.93 |
| KRH46297 | Soybean | nucleus | 30.65 | 7.93 |
| KRH66628 | Soybean | nucleus | 30.65 | 7.82 |
| KRH34534 | Soybean | nucleus | 28.23 | 7.43 |
| KRG92276 | Soybean | endoplasmic reticulum | 28.23 | 7.35 |
| KRH73477 | Soybean | nucleus | 29.03 | 7.26 |
| KRH74025 | Soybean | nucleus | 27.42 | 7.16 |
| KRH28467 | Soybean | cytosol | 20.97 | 7.12 |
| KRH14098 | Soybean | nucleus | 27.42 | 7.1 |
| KRH14673 | Soybean | nucleus | 28.23 | 7.09 |
| KRH77004 | Soybean | nucleus | 20.16 | 6.91 |
| CDY13339 | Canola | mitochondrion | 8.87 | 6.55 |
| KRH05541 | Soybean | cytosol, endoplasmic reticulum | 12.1 | 4.63 |
| CDY21399 | Canola | mitochondrion | 3.23 | 2.76 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | UniProt:A0A0R0G4R1 | EMBL:ACUP02009679 | EnsemblPlantsGene:GLYMA_15G226400 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | EnsemblPlants:KRH13261 |
| ProteinID:KRH13261 | ProteinID:KRH13261.1 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44374 |
| PANTHER:PTHR44374:SF4 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0006EDD27D |
Description
hypothetical protein
Coordinates
chr15:-:41624914..41625528
Molecular Weight (calculated)
13710.4 Da
IEP (calculated)
9.629
GRAVY (calculated)
-0.260
Length
124 amino acids
Sequence
(BLAST)
(BLAST)
001: MTPVNLAGQF GDTTYTKVFV GGLAWETQKE TMKKYFKQFG EILEAAVITD KATGRSKGYG FVTFREPEAA MRACVDPAPV IDGRKANYNL ASLGVQRSKP
101: STPKHGPYIF YFSFDTVINN LANL
101: STPKHGPYIF YFSFDTVINN LANL
001: MAGGIGLGDT TYTKVFVGGL AWETHKETMK KHFEQFGEIL EAVVITDKAS GRSKGYGFVT FREAEAARSA CVDATPVIDG RRANCNLASL GLQRSKPSTP
101: NHGGGGRINN MRVMMSTMQT GFGPPPPPQP PTFTHYPHLP LNLFGYSPYS PDYSSFPTNL YGMYGCTSGG QYGVYGNRNS GGGGLTAAAA SATPFYPCGG
201: GHGGVQFSQP QPFYHHLSSY NPHHYSPPTF SMQQGSRNRL SASTTSYSLP LKKLRVFGSY QASYHHLLLL RSRAILWFKG CSWLISALSF SPSALKATPF
301: YGIWRWLFKQ IPMGSPVSDG DHVVFVISHL LAIASSRENG FLFERYC
101: NHGGGGRINN MRVMMSTMQT GFGPPPPPQP PTFTHYPHLP LNLFGYSPYS PDYSSFPTNL YGMYGCTSGG QYGVYGNRNS GGGGLTAAAA SATPFYPCGG
201: GHGGVQFSQP QPFYHHLSSY NPHHYSPPTF SMQQGSRNRL SASTTSYSLP LKKLRVFGSY QASYHHLLLL RSRAILWFKG CSWLISALSF SPSALKATPF
301: YGIWRWLFKQ IPMGSPVSDG DHVVFVISHL LAIASSRENG FLFERYC
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4I321]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.