Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 2
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH16743 | Soybean | nucleus | 95.29 | 95.99 |
| KRH62327 | Soybean | nucleus | 77.54 | 74.56 |
| KRH53044 | Soybean | nucleus | 76.81 | 73.87 |
| VIT_18s0001g05840.t01 | Wine grape | nucleus | 72.83 | 72.83 |
| KRH75298 | Soybean | cytosol, nucleus | 23.55 | 65.66 |
| Solyc04g074310.2.1 | Tomato | nucleus | 64.13 | 60.41 |
| KRH13261 | Soybean | cytosol | 26.45 | 58.87 |
| AT1G78260.1 | Thale cress | nucleus | 56.16 | 54.01 |
| Bra003651.1-P | Field mustard | nucleus | 52.54 | 53.51 |
| Bra031385.1-P | Field mustard | nucleus | 55.43 | 52.76 |
| CDX68024 | Canola | nucleus | 53.99 | 52.65 |
| CDX87460 | Canola | nucleus | 54.35 | 52.63 |
| AT1G22330.1 | Thale cress | nucleus | 55.43 | 52.58 |
| CDY21356 | Canola | nucleus | 55.07 | 52.41 |
| CDX79253 | Canola | nucleus | 52.9 | 52.14 |
| CDX88432 | Canola | nucleus | 53.62 | 52.11 |
| CDY46642 | Canola | nucleus | 53.99 | 51.56 |
| Bra012321.1-P | Field mustard | nucleus | 53.99 | 51.56 |
| CDY00446 | Canola | nucleus | 53.26 | 43.24 |
| KRH60871 | Soybean | nucleus, plastid | 44.2 | 42.66 |
| KRH51553 | Soybean | nucleus, plastid | 44.2 | 42.66 |
| KRH62942 | Soybean | mitochondrion | 29.35 | 39.71 |
| KRH40033 | Soybean | nucleus | 38.04 | 38.6 |
| KRH23771 | Soybean | nucleus | 38.04 | 38.6 |
| KRH53608 | Soybean | nucleus | 34.06 | 38.21 |
| KRH64318 | Soybean | nucleus | 34.42 | 36.97 |
| KRH07772 | Soybean | cytosol | 11.96 | 33.67 |
| KRH06373 | Soybean | nucleus | 33.33 | 33.21 |
| KRH06384 | Soybean | nucleus | 35.87 | 32.89 |
| KRH47819 | Soybean | nucleus | 35.14 | 32.77 |
| KRH47731 | Soybean | nucleus | 30.07 | 31.09 |
| KRH47808 | Soybean | nucleus | 31.88 | 30.77 |
| KRH06306 | Soybean | nucleus | 29.71 | 30.48 |
| VIT_16s0098g01050.t01 | Wine grape | endoplasmic reticulum, extracellular | 26.09 | 24.74 |
| KRH56541 | Soybean | nucleus | 12.68 | 17.5 |
| KRH71299 | Soybean | nucleus | 23.19 | 16.67 |
| KRH50169 | Soybean | nucleus | 22.46 | 16.15 |
| KRG95365 | Soybean | nucleus | 19.57 | 16.07 |
| KRH67043 | Soybean | nucleus | 19.57 | 15.88 |
| KRH55109 | Soybean | nucleus | 24.28 | 15.09 |
| KRG94084 | Soybean | nucleus | 20.29 | 14.97 |
| KRH26210 | Soybean | nucleus | 23.55 | 14.87 |
| KRH07154 | Soybean | nucleus | 19.93 | 14.78 |
| KRH17717 | Soybean | nucleus | 18.48 | 14.49 |
| KRG93213 | Soybean | nucleus | 19.57 | 14.32 |
| KRH23293 | Soybean | nucleus | 16.67 | 13.03 |
| KRH34534 | Soybean | nucleus | 21.01 | 12.31 |
| KRG92276 | Soybean | endoplasmic reticulum | 21.01 | 12.18 |
| KRG98573 | Soybean | nucleus | 21.01 | 12.11 |
| KRH28467 | Soybean | cytosol | 15.94 | 12.05 |
| KRH74025 | Soybean | nucleus | 20.65 | 12.0 |
| KRH52137 | Soybean | nucleus | 16.3 | 11.9 |
| KRH46297 | Soybean | nucleus | 20.65 | 11.9 |
| KRH14098 | Soybean | nucleus | 20.65 | 11.9 |
| KRH77004 | Soybean | nucleus | 15.58 | 11.88 |
| KRH61448 | Soybean | nucleus | 16.3 | 11.72 |
| KRH73860 | Soybean | nucleus | 19.93 | 11.53 |
| KRH14284 | Soybean | nucleus | 19.93 | 11.51 |
| KRH05541 | Soybean | cytosol, endoplasmic reticulum | 13.04 | 11.11 |
| KRH73477 | Soybean | nucleus | 19.93 | 11.09 |
| KRG94993 | Soybean | nucleus | 19.2 | 11.06 |
| KRH14673 | Soybean | nucleus | 19.57 | 10.93 |
| KRH66628 | Soybean | nucleus | 18.84 | 10.7 |
Protein Annotations
| EntrezGene:100787086 | Gene3D:3.30.70.330 | MapMan:35.1 | EMBL:ACUP02008147 | EnsemblPlantsGene:GLYMA_13G089800 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | UniProt:I1LVX9 | InterPro:IPR000504 | InterPro:IPR012677 |
| EnsemblPlants:KRH18921 | ProteinID:KRH18921 | ProteinID:KRH18921.1 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 |
| PANTHER:PTHR44828 | PANTHER:PTHR44828:SF3 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 |
| UniParc:UPI00023D14E8 | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr13:+:20456746..20462493
Molecular Weight (calculated)
30113.0 Da
IEP (calculated)
9.175
GRAVY (calculated)
-0.776
Length
276 amino acids
Sequence
(BLAST)
(BLAST)
001: MAYPHYRSQF GDTTFTKVFV GGLAWETPTE EMRKYFEQFG DILEAVIITD KNTGKSKGYG FVTFRDPESA RRACTDPNPV IDGRRANCNI ASLGRPRPSP
101: PRGRGTFQGG GAPGTTAASY GGVPAAGPPP ALAPPPPPLV YPPYGYPTYT PDYGYHQATM YNPQIQQPQY YHQQLYGPSS STMGSPYYYG YSVQAPRGTF
201: SSTQPHRLPA GPSYLYYPTP MEGSFPAYRP PPQLQQLPIR QPPSSPSDSQ TQQRTSSETA GGVVITSESS NTQGRN
101: PRGRGTFQGG GAPGTTAASY GGVPAAGPPP ALAPPPPPLV YPPYGYPTYT PDYGYHQATM YNPQIQQPQY YHQQLYGPSS STMGSPYYYG YSVQAPRGTF
201: SSTQPHRLPA GPSYLYYPTP MEGSFPAYRP PPQLQQLPIR QPPSSPSDSQ TQQRTSSETA GGVVITSESS NTQGRN
001: MSNTSYYRSP FGDTTHTKVF VGGLAWETPT DEMRRYFDQF GEILEAVIIT DKATGKSKGY GFVTFRDSDS ATRAVADPNP VIDGRKANCN IASFGRPRPS
101: TPRGRGQGGS PSQYQGGGQS SYTGMAAPVQ QAAAAQLMYP SYGYTYNSEY GYHQALYNAQ LQQAQYYQQQ MYGGGGATSP SSSNIMPSPY YYLQAPSPRP
201: YLHHQQHYQY HHHQQQQQQQ QQRLPSASSY LIYPSNVEAP TPSNVPTSQG PLSSSTESHA PQQVSEEGGE FDPTDAPEST TTNIRDLTSS S
101: TPRGRGQGGS PSQYQGGGQS SYTGMAAPVQ QAAAAQLMYP SYGYTYNSEY GYHQALYNAQ LQQAQYYQQQ MYGGGGATSP SSSNIMPSPY YYLQAPSPRP
201: YLHHQQHYQY HHHQQQQQQQ QQRLPSASSY LIYPSNVEAP TPSNVPTSQG PLSSSTESHA PQQVSEEGGE FDPTDAPEST TTNIRDLTSS S
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LME7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.