Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH52137 | Soybean | nucleus | 90.1 | 91.53 |
| Solyc04g077520.2.1 | Tomato | nucleus | 42.45 | 47.8 |
| PGSC0003DMT400012586 | Potato | nucleus | 42.71 | 47.67 |
| KRH07772 | Soybean | cytosol | 11.46 | 44.9 |
| KRH56541 | Soybean | nucleus | 20.31 | 39.0 |
| KRH46297 | Soybean | nucleus | 35.94 | 28.81 |
| KRG98573 | Soybean | nucleus | 35.94 | 28.81 |
| KRH17717 | Soybean | nucleus | 25.78 | 28.12 |
| KRH05541 | Soybean | cytosol, endoplasmic reticulum | 23.7 | 28.09 |
| KRH07154 | Soybean | nucleus | 27.08 | 27.96 |
| KRH34534 | Soybean | nucleus | 34.11 | 27.81 |
| KRG94084 | Soybean | nucleus | 27.08 | 27.81 |
| KRG92276 | Soybean | endoplasmic reticulum | 34.38 | 27.73 |
| KRH23293 | Soybean | nucleus | 25.26 | 27.48 |
| KRH73860 | Soybean | nucleus | 34.11 | 27.46 |
| KRH13261 | Soybean | cytosol | 8.85 | 27.42 |
| KRG93213 | Soybean | nucleus | 26.82 | 27.32 |
| KRH14284 | Soybean | nucleus | 33.59 | 26.99 |
| KRH74025 | Soybean | nucleus | 32.55 | 26.32 |
| KRH75298 | Soybean | cytosol, nucleus | 6.77 | 26.26 |
| KRH14098 | Soybean | nucleus | 32.55 | 26.1 |
| KRH28467 | Soybean | cytosol | 20.05 | 21.1 |
| KRH77004 | Soybean | nucleus | 19.79 | 20.99 |
| KRH23771 | Soybean | nucleus | 14.06 | 19.85 |
| KRH40033 | Soybean | nucleus | 13.54 | 19.12 |
| KRH50169 | Soybean | nucleus | 18.23 | 18.23 |
| KRH71299 | Soybean | nucleus | 17.71 | 17.71 |
| KRH60871 | Soybean | nucleus, plastid | 13.02 | 17.48 |
| KRH51553 | Soybean | nucleus, plastid | 13.02 | 17.48 |
| KRH47731 | Soybean | nucleus | 11.98 | 17.23 |
| KRH06306 | Soybean | nucleus | 11.98 | 17.1 |
| KRH67043 | Soybean | nucleus | 15.1 | 17.06 |
| KRG95365 | Soybean | nucleus | 14.84 | 16.96 |
| KRH18921 | Soybean | nucleus | 11.72 | 16.3 |
| KRH62942 | Soybean | mitochondrion | 8.59 | 16.18 |
| KRH16743 | Soybean | nucleus | 11.46 | 16.06 |
| KRH64318 | Soybean | nucleus | 10.42 | 15.56 |
| KRH26210 | Soybean | nucleus | 17.71 | 15.56 |
| KRH55109 | Soybean | nucleus | 17.71 | 15.32 |
| KRH53044 | Soybean | nucleus | 10.94 | 14.63 |
| KRH53608 | Soybean | nucleus | 9.38 | 14.63 |
| KRH62327 | Soybean | nucleus | 10.94 | 14.63 |
| KRH06384 | Soybean | nucleus | 10.68 | 13.62 |
| KRG94993 | Soybean | nucleus | 16.93 | 13.57 |
| KRH47819 | Soybean | nucleus | 10.42 | 13.51 |
| KRH06373 | Soybean | nucleus | 9.64 | 13.36 |
| KRH66628 | Soybean | nucleus | 16.67 | 13.17 |
| KRH47808 | Soybean | nucleus | 9.64 | 12.94 |
| KRH73477 | Soybean | nucleus | 16.67 | 12.9 |
| KRH14673 | Soybean | nucleus | 16.41 | 12.75 |
Protein Annotations
| EntrezGene:100786665 | Gene3D:3.30.70.330 | MapMan:35.1 | EMBL:ACUP02002164 | EnsemblPlantsGene:GLYMA_04G047800 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | UniProt:I1JTT1 | InterPro:IPR000504 | InterPro:IPR012677 |
| EnsemblPlants:KRH61448 | ProteinID:KRH61448 | ProteinID:KRH61448.1 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000233967F | SEG:seg |
Description
hypothetical protein
Coordinates
chr4:+:3840781..3842998
Molecular Weight (calculated)
41930.8 Da
IEP (calculated)
8.087
GRAVY (calculated)
-0.523
Length
384 amino acids
Sequence
(BLAST)
(BLAST)
001: MNFKMDSDSA KLFVGGISRD TTEHVLKLHF AKYGVVSDST ISVDRTTRSP RGFGFVTFSD LSAADKALQD THVILGRTVE VKKAIPRSEQ HQHQNPLQSR
101: GGGYYYNNNN NNNDDNNNNS NDYCSDHNVR TKKIFVGGLP AGISEEEFKN YFERFGRITD VVVMQDSVTH RPRGFGFITF ESEESVQNVM VKSFHDLNGR
201: QVEVKRAVPK EGNHGYDGFS KLRNKSERGV PKSFPPFSHR DMLPLPGFTP LPWYSGDGVY AYGSNAYGCW YPVGGYGGNG YAVPSDAPSN LWYGPMMTGP
301: QACQVPYASA VPNVVYVGGR IGIVGSGAGS WGYTGIMGSA TNFKFDQAFN ANEFVPGNVT SPHGVKQDVI DSSSLKGSNG GISS
101: GGGYYYNNNN NNNDDNNNNS NDYCSDHNVR TKKIFVGGLP AGISEEEFKN YFERFGRITD VVVMQDSVTH RPRGFGFITF ESEESVQNVM VKSFHDLNGR
201: QVEVKRAVPK EGNHGYDGFS KLRNKSERGV PKSFPPFSHR DMLPLPGFTP LPWYSGDGVY AYGSNAYGCW YPVGGYGGNG YAVPSDAPSN LWYGPMMTGP
301: QACQVPYASA VPNVVYVGGR IGIVGSGAGS WGYTGIMGSA TNFKFDQAFN ANEFVPGNVT SPHGVKQDVI DSSSLKGSNG GISS
001: MDYDRYKLFV GGIAKETSEE ALKQYFSRYG AVLEAVVAKE KVTGKPRGFG FVRFANDCDV VKALRDTHFI LGKPVDVRKA IRKHELYQQP FSMQFLERKV
101: QQMNGGLREM SSNGVTSRTK KIFVGGLSSN TTEEEFKSYF ERFGRTTDVV VMHDGVTNRP RGFGFVTYDS EDSVEVVMQS NFHELSDKRV EVKRAIPKEG
201: IQSNNGNAVN IPPSYSSFQA TPYVPEQNGY GMVLQFPPPV FGYHHNVQAV QYPYGYQFTA QVANVSWNNP IMQPTGFYCA PPHPTPPPTN NLGYIQYMNG
301: FDLSGTNISG YNPLAWPVTG DAAGALIHQF VDLKLDVHSQ AHQRMNGGNM GIPLQNGTYI
101: QQMNGGLREM SSNGVTSRTK KIFVGGLSSN TTEEEFKSYF ERFGRTTDVV VMHDGVTNRP RGFGFVTYDS EDSVEVVMQS NFHELSDKRV EVKRAIPKEG
201: IQSNNGNAVN IPPSYSSFQA TPYVPEQNGY GMVLQFPPPV FGYHHNVQAV QYPYGYQFTA QVANVSWNNP IMQPTGFYCA PPHPTPPPTN NLGYIQYMNG
301: FDLSGTNISG YNPLAWPVTG DAAGALIHQF VDLKLDVHSQ AHQRMNGGNM GIPLQNGTYI
Arabidopsis Description
RBP1RNA-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C652]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.