Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 3
- endoplasmic reticulum 4
- vacuole 3
- plasma membrane 3
- golgi 3
- plastid 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH52137 | Soybean | nucleus | 28.4 | 24.34 |
| KRH56541 | Soybean | nucleus | 14.81 | 24.0 |
| KRH61448 | Soybean | nucleus | 28.09 | 23.7 |
| CDY45879 | Canola | cytosol, nucleus, plastid | 22.53 | 21.1 |
| CDY44555 | Canola | cytosol, nucleus, plastid | 23.15 | 20.66 |
| KRH17717 | Soybean | nucleus | 22.22 | 20.45 |
| CDY42061 | Canola | cytosol, nucleus, plastid | 22.84 | 20.39 |
| AT1G58470.2 | Thale cress | cytosol, nucleus, plastid | 22.53 | 20.28 |
| CDY48851 | Canola | cytosol, nucleus, peroxisome | 22.22 | 19.78 |
| Bra027860.1-P | Field mustard | cytosol, nucleus, peroxisome | 21.91 | 19.51 |
| KRG98573 | Soybean | nucleus | 27.78 | 18.79 |
| KRH46297 | Soybean | nucleus | 27.78 | 18.79 |
| KRH73860 | Soybean | nucleus | 27.16 | 18.45 |
| KRG93213 | Soybean | nucleus | 21.3 | 18.3 |
| KRH07154 | Soybean | nucleus | 20.99 | 18.28 |
| KRG94084 | Soybean | nucleus | 20.99 | 18.18 |
| KRG92276 | Soybean | endoplasmic reticulum | 26.54 | 18.07 |
| KRH34534 | Soybean | nucleus | 26.23 | 18.05 |
| KRH14284 | Soybean | nucleus | 26.23 | 17.78 |
| KRH74025 | Soybean | nucleus | 25.93 | 17.68 |
| KRH14098 | Soybean | nucleus | 25.62 | 17.33 |
| KRH77004 | Soybean | nucleus | 18.52 | 16.57 |
| KRH28467 | Soybean | cytosol | 18.52 | 16.44 |
| VIT_18s0001g08640.t01 | Wine grape | nucleus | 23.77 | 16.35 |
| KRH23293 | Soybean | nucleus | 17.28 | 15.86 |
| KRH07772 | Soybean | cytosol | 4.63 | 15.31 |
| KRH51553 | Soybean | nucleus, plastid | 12.35 | 13.99 |
| KRH60871 | Soybean | nucleus, plastid | 12.04 | 13.64 |
| KRH16743 | Soybean | nucleus | 11.11 | 13.14 |
| KRH18921 | Soybean | nucleus | 11.11 | 13.04 |
| KRH23771 | Soybean | nucleus | 10.8 | 12.87 |
| KRG95365 | Soybean | nucleus | 12.96 | 12.5 |
| KRH67043 | Soybean | nucleus | 12.96 | 12.35 |
| KRH40033 | Soybean | nucleus | 10.19 | 12.13 |
| KRH13261 | Soybean | cytosol | 4.63 | 12.1 |
| KRH53044 | Soybean | nucleus | 10.19 | 11.5 |
| KRH62327 | Soybean | nucleus | 10.19 | 11.5 |
| KRH47731 | Soybean | nucleus | 8.95 | 10.86 |
| KRH06306 | Soybean | nucleus | 8.95 | 10.78 |
| KRH50169 | Soybean | nucleus | 12.65 | 10.68 |
| KRH06384 | Soybean | nucleus | 9.88 | 10.63 |
| KRH53608 | Soybean | nucleus | 8.02 | 10.57 |
| KRH26210 | Soybean | nucleus | 13.89 | 10.3 |
| Bra035441.1-P | Field mustard | mitochondrion, nucleus, plastid | 2.47 | 10.26 |
| KRH71299 | Soybean | nucleus | 12.04 | 10.16 |
| KRH47819 | Soybean | nucleus | 9.26 | 10.14 |
| KRH75298 | Soybean | cytosol, nucleus | 3.09 | 10.1 |
| KRH14673 | Soybean | nucleus | 15.12 | 9.92 |
| KRH55109 | Soybean | nucleus | 13.58 | 9.91 |
| KRH62942 | Soybean | mitochondrion | 6.17 | 9.8 |
| KRH64318 | Soybean | nucleus | 7.72 | 9.73 |
| KRH73477 | Soybean | nucleus | 14.81 | 9.68 |
| KRG94993 | Soybean | nucleus | 13.89 | 9.39 |
| KRH66628 | Soybean | nucleus | 13.89 | 9.26 |
| KRH06373 | Soybean | nucleus | 7.41 | 8.66 |
| KRH47808 | Soybean | nucleus | 7.41 | 8.39 |
Protein Annotations
| EMBL:ACUP02010750 | EnsemblPlants:KRH05541 | EnsemblPlantsGene:GLYMA_17G232500 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | PANTHER:PTHR44291 | PFAM:PF00076 | PFscan:PS50102 | ProteinID:KRH05541 | ProteinID:KRH05541.1 |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0006ED979A | UniProt:A0A0R0FSL3 | MapMan:35.1 | : |
Description
hypothetical protein
Coordinates
chr17:-:38764969..38766929
Molecular Weight (calculated)
36905.9 Da
IEP (calculated)
5.774
GRAVY (calculated)
-0.398
Length
324 amino acids
Sequence
(BLAST)
(BLAST)
001: MAALGVSTFF TSLQWICVDK VLHAVSRDDK TLKDINVEPK ISCTTKAHED TRDVSIVSCV DKAMKDTHVI HDKALEDEIL KDIHGEPEIS FVNEKTLEDI
101: HVVSTISCVD KIEMMEEMPK NEVQQESQIM NKRKIINEMV WRKKIFVGGL PSGISEEEFK NYFERFGTIT DVVVIQDSVT HRPRGFGFIT FDSEKLVENV
201: MLNSFHDLNG KIVEVKRVVP KLENNNNGAF DQLKSNYGKG TSLKSFPYYY GTNSSIPIPD CGPSPWYQNN GLYFHAPNSY DWYPIDASFP WHMPMVPMTQ
301: PCPHPFGYCF PSYPYVGGND GVKR
101: HVVSTISCVD KIEMMEEMPK NEVQQESQIM NKRKIINEMV WRKKIFVGGL PSGISEEEFK NYFERFGTIT DVVVIQDSVT HRPRGFGFIT FDSEKLVENV
201: MLNSFHDLNG KIVEVKRVVP KLENNNNGAF DQLKSNYGKG TSLKSFPYYY GTNSSIPIPD CGPSPWYQNN GLYFHAPNSY DWYPIDASFP WHMPMVPMTQ
301: PCPHPFGYCF PSYPYVGGND GVKR
001: MDYDRYKLFV GGIAKETSEE ALKQYFSRYG AVLEAVVAKE KVTGKPRGFG FVRFANDCDV VKALRDTHFI LGKPVDVRKA IRKHELYQQP FSMQFLERKV
101: QQMNGGLREM SSNGVTSRTK KIFVGGLSSN TTEEEFKSYF ERFGRTTDVV VMHDGVTNRP RGFGFVTYDS EDSVEVVMQS NFHELSDKRV EVKRAIPKEG
201: IQSNNGNAVN IPPSYSSFQA TPYVPEQNGY GMVLQFPPPV FGYHHNVQAV QYPYGYQFTA QVANVSWNNP IMQPTGFYCA PPHPTPPPTN NLGYIQYMNG
301: FDLSGTNISG YNPLAWPVTG DAAGALIHQF VDLKLDVHSQ AHQRMNGGNM GIPLQNGTYI
101: QQMNGGLREM SSNGVTSRTK KIFVGGLSSN TTEEEFKSYF ERFGRTTDVV VMHDGVTNRP RGFGFVTYDS EDSVEVVMQS NFHELSDKRV EVKRAIPKEG
201: IQSNNGNAVN IPPSYSSFQA TPYVPEQNGY GMVLQFPPPV FGYHHNVQAV QYPYGYQFTA QVANVSWNNP IMQPTGFYCA PPHPTPPPTN NLGYIQYMNG
301: FDLSGTNISG YNPLAWPVTG DAAGALIHQF VDLKLDVHSQ AHQRMNGGNM GIPLQNGTYI
Arabidopsis Description
RBP1RNA-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C652]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.