Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g077520.2.1 | Tomato | nucleus | 29.72 | 41.06 |
| PGSC0003DMT400012586 | Potato | nucleus | 29.51 | 40.41 |
| Bra035441.1-P | Field mustard | mitochondrion, nucleus, plastid | 6.37 | 38.46 |
| CDY45879 | Canola | cytosol, nucleus, plastid | 26.75 | 36.42 |
| AT1G58470.2 | Thale cress | cytosol, nucleus, plastid | 27.81 | 36.39 |
| CDY42061 | Canola | cytosol, nucleus, plastid | 27.6 | 35.81 |
| Bra027860.1-P | Field mustard | cytosol, nucleus, peroxisome | 27.6 | 35.71 |
| CDY48851 | Canola | cytosol, nucleus, peroxisome | 27.18 | 35.16 |
| CDY44555 | Canola | cytosol, nucleus, plastid | 26.33 | 34.16 |
| VIT_19s0015g00920.t01 | Wine grape | nucleus | 20.59 | 27.87 |
| VIT_18s0117g00150.t01 | Wine grape | nucleus | 20.59 | 27.02 |
| VIT_07s0005g03980.t01 | Wine grape | nucleus | 24.84 | 26.96 |
| VIT_05s0049g01660.t01 | Wine grape | nucleus | 26.11 | 26.51 |
| VIT_09s0002g02350.t01 | Wine grape | cytosol | 19.75 | 26.35 |
| VIT_12s0057g01280.t01 | Wine grape | nucleus | 14.23 | 25.97 |
| VIT_14s0066g00480.t01 | Wine grape | nucleus | 20.59 | 25.8 |
| VIT_19s0090g01660.t01 | Wine grape | nucleus | 25.27 | 24.9 |
| VIT_12s0057g00480.t01 | Wine grape | nucleus | 25.27 | 24.9 |
| KRH05541 | Soybean | cytosol, endoplasmic reticulum | 16.35 | 23.77 |
| VIT_07s0031g00600.t01 | Wine grape | cytosol | 16.14 | 21.17 |
| VIT_08s0007g06300.t01 | Wine grape | nucleus | 12.95 | 17.84 |
| VIT_18s0089g00920.t01 | Wine grape | nucleus | 9.34 | 16.36 |
| VIT_18s0122g00660.t01 | Wine grape | nucleus, plastid | 9.34 | 15.44 |
| VIT_15s0048g02630.t01 | Wine grape | nucleus | 8.7 | 15.36 |
| VIT_18s0001g05840.t01 | Wine grape | nucleus | 8.49 | 14.49 |
| VIT_19s0014g01570.t01 | Wine grape | nucleus | 13.59 | 14.25 |
| VIT_13s0019g03610.t01 | Wine grape | nucleus | 7.43 | 14.17 |
| VIT_06s0009g01190.t01 | Wine grape | nucleus | 11.89 | 12.25 |
| VIT_07s0031g01290.t01 | Wine grape | nucleus | 8.92 | 10.71 |
| VIT_16s0098g01050.t01 | Wine grape | endoplasmic reticulum, extracellular | 6.58 | 10.65 |
| VIT_06s0009g01180.t01 | Wine grape | mitochondrion, nucleus, plastid | 11.68 | 10.62 |
| VIT_08s0056g00690.t01 | Wine grape | nucleus | 10.4 | 10.58 |
Protein Annotations
| EntrezGene:100255821 | wikigene:100255821 | Gene3D:3.30.70.330 | MapMan:35.1 | EMBL:AM449155 | ProteinID:CAN67607 |
| ProteinID:CAN67607.1 | ProteinID:CCB45725 | ProteinID:CCB45725.1 | UniProt:F6H174 | EMBL:FN595227 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | EntrezGene:LOC100255821 |
| wikigene:LOC100255821 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44291 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI00019853E4 | ArrayExpress:VIT_18s0001g08640 | EnsemblPlantsGene:VIT_18s0001g08640 |
| EnsemblPlants:VIT_18s0001g08640.t01 | RefSeq:XP_002283509 | RefSeq:XP_002283509.1 | RefSeq:XP_019072303.1 | SEG:seg | : |
Description
No Description!
Coordinates
chr18:-:7074678..7076681
Molecular Weight (calculated)
50459.7 Da
IEP (calculated)
4.764
GRAVY (calculated)
-0.669
Length
471 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEQVKLFVG GVSGAITEGL LRDYFSKYGT VVETYIRRDS GRTPRGGFGF VTFADAASLS RALQDQQQHF IQGQRVEVKR AMNKGQRNLD GSGNNNFTSK
101: KIFVGGLSSN LTEEEFKNYF ERFGRITDVV VMHDSATRRP RGFGFITFES EESVEHVMQN NFYELNGKRV EVKRAVPKEA NNNNKNGYNM RMGGGRGSSF
201: PLHGQNLPYA PAPGYEIFPG YFPYSGYGCI ENYCYAATSM YPGGYFMGEN AGIDYGRTPF QHPWNGPGSL GSAIMYPPYS SGRNMVAGSS NGLVGPRTSS
301: RSQADATPTP SQNDSSLEDA NGNFNPPSLV LNNSVGGKLG MVCNGEAPNS AGENSGPHSL KDDGAVSSPL KEDGSEFSSH LKVDCAASPS DSKDDGTVSP
401: SDSFDGAASP DIKGDGVASS SDSYDNGSTC SLNTSTDNLE CNGAASNSSY DIQNQNDIDE QLKPSPDCDS S
101: KIFVGGLSSN LTEEEFKNYF ERFGRITDVV VMHDSATRRP RGFGFITFES EESVEHVMQN NFYELNGKRV EVKRAVPKEA NNNNKNGYNM RMGGGRGSSF
201: PLHGQNLPYA PAPGYEIFPG YFPYSGYGCI ENYCYAATSM YPGGYFMGEN AGIDYGRTPF QHPWNGPGSL GSAIMYPPYS SGRNMVAGSS NGLVGPRTSS
301: RSQADATPTP SQNDSSLEDA NGNFNPPSLV LNNSVGGKLG MVCNGEAPNS AGENSGPHSL KDDGAVSSPL KEDGSEFSSH LKVDCAASPS DSKDDGTVSP
401: SDSFDGAASP DIKGDGVASS SDSYDNGSTC SLNTSTDNLE CNGAASNSSY DIQNQNDIDE QLKPSPDCDS S
001: MDYDRYKLFV GGIAKETSEE ALKQYFSRYG AVLEAVVAKE KVTGKPRGFG FVRFANDCDV VKALRDTHFI LGKPVDVRKA IRKHELYQQP FSMQFLERKV
101: QQMNGGLREM SSNGVTSRTK KIFVGGLSSN TTEEEFKSYF ERFGRTTDVV VMHDGVTNRP RGFGFVTYDS EDSVEVVMQS NFHELSDKRV EVKRAIPKEG
201: IQSNNGNAVN IPPSYSSFQA TPYVPEQNGY GMVLQFPPPV FGYHHNVQAV QYPYGYQFTA QVANVSWNNP IMQPTGFYCA PPHPTPPPTN NLGYIQYMNG
301: FDLSGTNISG YNPLAWPVTG DAAGALIHQF VDLKLDVHSQ AHQRMNGGNM GIPLQNGTYI
101: QQMNGGLREM SSNGVTSRTK KIFVGGLSSN TTEEEFKSYF ERFGRTTDVV VMHDGVTNRP RGFGFVTYDS EDSVEVVMQS NFHELSDKRV EVKRAIPKEG
201: IQSNNGNAVN IPPSYSSFQA TPYVPEQNGY GMVLQFPPPV FGYHHNVQAV QYPYGYQFTA QVANVSWNNP IMQPTGFYCA PPHPTPPPTN NLGYIQYMNG
301: FDLSGTNISG YNPLAWPVTG DAAGALIHQF VDLKLDVHSQ AHQRMNGGNM GIPLQNGTYI
Arabidopsis Description
RBP1RNA-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C652]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.