Factsheet for VIT_16s0098g01050.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 6
vacuole 5
plasma membrane 5
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_15s0048g02630.t01	Wine grape	nucleus	36.77	40.07
VIT_18s0089g00920.t01	Wine grape	nucleus	29.55	31.97
VIT_13s0019g03610.t01	Wine grape	nucleus	24.74	29.15
VIT_18s0122g00660.t01	Wine grape	nucleus, plastid	28.52	29.12
VIT_18s0001g05840.t01	Wine grape	nucleus	26.12	27.54
KRH16743	Soybean	nucleus	24.74	26.28
KRH18921	Soybean	nucleus	24.74	26.09
KRH62327	Soybean	nucleus	24.05	24.39
KRH53044	Soybean	nucleus	23.71	24.04
VIT_08s0007g06300.t01	Wine grape	nucleus	14.43	12.28
VIT_19s0015g00920.t01	Wine grape	nucleus	13.75	11.49
VIT_18s0117g00150.t01	Wine grape	nucleus	13.75	11.14
VIT_19s0014g01570.t01	Wine grape	nucleus	17.18	11.14
VIT_14s0066g00480.t01	Wine grape	nucleus	13.4	10.37
VIT_09s0002g02350.t01	Wine grape	cytosol	12.37	10.2
VIT_07s0005g03980.t01	Wine grape	nucleus	15.12	10.14
VIT_05s0049g01660.t01	Wine grape	nucleus	14.43	9.05
VIT_12s0057g01280.t01	Wine grape	nucleus	7.9	8.91
VIT_07s0031g00600.t01	Wine grape	cytosol	11.0	8.91
VIT_08s0056g00690.t01	Wine grape	nucleus	13.4	8.42
VIT_12s0057g00480.t01	Wine grape	nucleus	13.4	8.16
VIT_06s0009g01190.t01	Wine grape	nucleus	12.71	8.1
VIT_19s0090g01660.t01	Wine grape	nucleus	12.37	7.53
VIT_06s0009g01180.t01	Wine grape	mitochondrion, nucleus, plastid	13.4	7.53
VIT_07s0031g01290.t01	Wine grape	nucleus	8.93	6.63
VIT_18s0001g08640.t01	Wine grape	nucleus	10.65	6.58

Protein Annotations

ArrayExpress:VIT_16s0098g01050	EnsemblPlants:VIT_16s0098g01050.t01	EnsemblPlantsGene:VIT_16s0098g01050	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	PANTHER:PTHR44374	PANTHER:PTHR44374:SF3
PFscan:PS51257	ProteinID:CCB48086.1	SEG:seg	SUPFAM:SSF54928	TMHMM:TMhelix	UniParc:UPI000210A6AC
UniProt:F6H763	MapMan:35.2	:	:	:	:

Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:TAIR;Acc:AT2G46780](projected from arabidopsis_thaliana,AT2G46780)

Coordinates

chr16:-:21329695..21331591

Molecular Weight (calculated)

28195.2 Da

IEP (calculated)

9.005

GRAVY (calculated)

-0.202

Length

291 amino acids

Sequence
(BLAST)

001: MIFHWKSLLL FSCAHLLLFY CLLGSCLFGV VVVVRWLWWY SCLIQGSIKW WAXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXSKGYG FVTFKDPDSA
101: MRACQDPSPV IDGRRANCNI ASLGAHKTRP PPHHGMERLR PASGSMGKPS HHGSSTNFRQ SNPHFSFPPY SVYGYSGYPQ ELYAMNYYNA YSGQQMSSYY
201: SSPSGTPGVY YGYYPVYTQQ GQSSQMQGFG IQYPQTTQYP YLPQPYQAVG ILPLPASASA SASASLGATA TGAATAAGEV TRTAAASEQG S

Best Arabidopsis Sequence Match ( AT2G46780.1 )
(BLAST)

001: MAQQRQFQME GGNNNTTDTK LTKIFVGGLA WETQRDTMRR YFEQFGEIVE AVVITDKNTG RSKGYGFVTF KEAEAAMRAC QNMNPVIDGR RANCNLACLG
101: AQKPRPPTSP RHGTGRFRSP GSGVGLVAPS PQFRGSSSSS AFVHQQQQQH TAQFPFPYST YGFSGYSQEG MYPMNYYNHH LYGGQQFSPY MGHPSAGSTG
201: MFHGFYPYYP QYNAAQSSNQ AQAQVQAQHH QGFSFQYTAP PAPPLLQYPY LPHQPHFSSQ QQFSSQQPPP PILSLPTSLA LSLPSSSSPS SSTSTSAATT
301: ATKTVVITTA TKKAETEASS KDGNEAMTTS TIKIEG

Arabidopsis Description

At2g46780 [Source:UniProtKB/TrEMBL;Acc:Q501B0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.