Factsheet for VIT_06s0009g01180.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus

Predictor Summary:

plastid 3
mitochondrion 4
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH14673	Soybean	nucleus	57.92	60.73
KRH73477	Soybean	nucleus	57.92	60.48
Solyc01g008970.2.1	Tomato	nucleus	42.47	58.51
PGSC0003DMT400058431	Potato	nucleus	52.9	55.92
VIT_08s0056g00690.t01	Wine grape	nucleus	48.65	54.43
GSMUA_Achr6P15950_001	Banana	nucleus	46.72	51.93
TraesCS3B01G211700.1	Wheat	nucleus	42.08	48.12
Zm00001d040344_P001	Maize	extracellular, plasma membrane	42.08	48.02
TraesCS3D01G186500.1	Wheat	nucleus	43.82	47.29
TraesCS3A01G181900.1	Wheat	nucleus	43.63	47.08
HORVU3Hr1G037280.1	Barley	nucleus, plastid	44.02	46.72
Os01t0265800-01	Rice	nucleus	43.44	45.92
EES02736	Sorghum	plastid	41.12	45.91
GSMUA_Achr10P...	Banana	mitochondrion, nucleus	37.07	44.24
VIT_06s0009g01190.t01	Wine grape	nucleus	35.14	39.82
GSMUA_Achr10P...	Banana	nucleus	17.37	38.96
VIT_07s0031g01290.t01	Wine grape	nucleus	29.34	38.78
HORVU6Hr1G054690.5	Barley	plastid	12.55	34.57
GSMUA_AchrUn_...	Banana	nucleus	27.8	33.57
TraesCS2A01G526400.1	Wheat	nucleus	32.24	32.81
TraesCS2B01G556700.1	Wheat	nucleus	32.24	32.81
TraesCS2D01G529100.1	Wheat	nucleus	32.24	32.81
HORVU2Hr1G116150.4	Barley	nucleus	26.06	32.61
GSMUA_Achr4P09210_001	Banana	nucleus	27.8	32.58
Os04t0636900-02	Rice	nucleus	32.24	32.43
KXG30578	Sorghum	nucleus	23.17	32.26
EES12939	Sorghum	nucleus	32.63	32.07
Zm00001d002141_P006	Maize	nucleus	32.24	32.05
Os02t0602600-00	Rice	nucleus	23.75	31.87
Zm00001d026397_P001	Maize	nucleus, plasma membrane	32.05	31.86
VIT_19s0014g01570.t01	Wine grape	nucleus	27.41	31.63
VIT_08s0007g06300.t01	Wine grape	nucleus	20.27	30.7
EES10068	Sorghum	nucleus	21.24	25.52
HORVU2Hr1G116230.1	Barley	nucleus	18.73	23.89
VIT_13s0019g03610.t01	Wine grape	nucleus	10.62	22.27
VIT_18s0122g00660.t01	Wine grape	nucleus, plastid	11.97	21.75
VIT_12s0057g01280.t01	Wine grape	nucleus	10.42	20.93
VIT_19s0015g00920.t01	Wine grape	nucleus	13.9	20.69
VIT_18s0089g00920.t01	Wine grape	nucleus	10.42	20.07
VIT_18s0001g05840.t01	Wine grape	nucleus	10.62	19.93
VIT_09s0002g02350.t01	Wine grape	cytosol	13.51	19.83
VIT_18s0117g00150.t01	Wine grape	nucleus	13.51	19.5
VIT_15s0048g02630.t01	Wine grape	nucleus	10.04	19.48
VIT_14s0066g00480.t01	Wine grape	nucleus	12.55	17.29
VIT_07s0031g00600.t01	Wine grape	cytosol	11.78	16.99
VIT_12s0057g00480.t01	Wine grape	nucleus	14.67	15.9
VIT_19s0090g01660.t01	Wine grape	nucleus	14.48	15.69
VIT_07s0005g03980.t01	Wine grape	nucleus	11.97	14.29
VIT_05s0049g01660.t01	Wine grape	nucleus	12.36	13.79
VIT_16s0098g01050.t01	Wine grape	endoplasmic reticulum, extracellular	7.53	13.4
VIT_18s0001g08640.t01	Wine grape	nucleus	10.62	11.68

Protein Annotations

EntrezGene:100258161	wikigene:100258161	Gene3D:3.30.70.330	MapMan:35.1	EMBL:AM443426	ProteinID:CAN80681
ProteinID:CAN80681.1	ProteinID:CCB49172	ProteinID:CCB49172.1	UniProt:F6HA68	EMBL:FN595504	GO:GO:0003674
EntrezGene:GO:0003676	GO:GO:0003676	wikigene:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504
InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44578	PANTHER:PTHR44578:SF4
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	TIGR:TC63473	UniParc:UPI000210A6D9
ArrayExpress:VIT_06s0009g01180	EnsemblPlantsGene:VIT_06s0009g01180	EnsemblPlants:VIT_06s0009g01180.t01	RefSeq:XP_003632233	RefSeq:XP_003632233.1	RefSeq:XP_003632234
RefSeq:XP_003632234.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6:-:12767560..12771516

Molecular Weight (calculated)

56429.7 Da

IEP (calculated)

5.035

GRAVY (calculated)

-0.766

Length

518 amino acids

Sequence
(BLAST)

001: MTLKCIRIYC LFRHALSLKR FSRFSNPSST RNPNPNFSMA KKRKLRSSEP ESSKAPEQEE QPQPTQEEDD QTKFEPIQED EDQPQHMAED EPKHEAQGEE
101: EEEEEGEGEE EEEEEGDQEG DVDASNEAVA DEVPADANGD GVEEDEGDVE DEEIEKLLEP FSKEQLLALL REAVEKYPDF VDSVRRLADA DPAHRKIFVH
201: GLGWDTTAET LTSVFGKYGE IEDCKAVSDK ISGKSKGYAF ILFKHRSGAR KALKQPQKKI GNRMTSCQLA SAGPVPAPPP VVPPVSEYTQ RKIFVSNVSS
301: EIDPQKLLEF FAKFGEIEEG PLGLDKSTGK PKGFALFVYK SIESSRRALE EPHKIFEGHT LHCQKAIDGP KPNKPFHHHH HQHQPHYPSR KDKSKYSANA
401: AGPGHLMAPS GPSMTLNPGV APALNPALGQ ALTALLASQG AGLGLTNLLG GLGGAPVNQA MPPAAHGMQG MQGGYGNQAG NAGRVPKPTN GAGQWRQASA
501: GWGTVYGSLD SSIDASIF

Best Arabidopsis Sequence Match ( AT3G56860.9 )
(BLAST)

001: MTKKRKLEGE ESNEAEEPSQ KLKQTPEEEQ QLVIKNQDNQ GDVEEVEYEE VEEEQEEEVE DDDDEDDGDE NEDQTDGNRI EAAATSGSGN QEDDDDEPIQ
101: DLLEPFSKEQ VLSLLKEAAE KHVDVANRIR EVADEDPVHR KIFVHGLGWD TKTETLIEAF KQYGEIEDCK AVFDKISGKS KGYGFILYKS RSGARNALKQ
201: PQKKIGSRMT ACQLASKGPV FGGAPIAAAA VSAPAQHSNS EHTQKKIYVS NVGAELDPQK LLMFFSKFGE IEEGPLGLDK YTGRPKGFCL FVYKSSESAK
301: RALEEPHKTF EGHILHCQKA IDGPKPGKQQ QHHHNPHAYN NPRYQRNDNN GYGPPGGHGH LMAGNPAGMG GPTAQVINPA IGQALTALLA SQGAGLAFNP
401: AIGQALLGSL GTAAGVNPGN GVGMPTGYGT QAMAPGTMPG YGTQPGLQGG YQTPQPGQGG TSRGQHGVGP YGTPYMGH

Arabidopsis Description

UBA2AUBP1-associated protein 2A [Source:UniProtKB/Swiss-Prot;Acc:Q9LES2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.