CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d040344_P001	Maize	extracellular, plasma membrane	89.01	90.97
TraesCS3D01G186500.1	Wheat	nucleus	68.1	65.83
TraesCS3A01G181900.1	Wheat	nucleus	67.89	65.62
TraesCS3B01G211700.1	Wheat	nucleus	63.79	65.34
Os01t0265800-01	Rice	nucleus	68.32	64.69
HORVU3Hr1G037280.1	Barley	nucleus, plastid	67.24	63.93
CDX76015	Canola	nucleus	32.97	50.16
Bra014667.1-P	Field mustard	nucleus	31.9	48.52
CDY27186	Canola	nucleus	46.34	47.88
Bra007277.1-P	Field mustard	nucleus	46.12	47.66
VIT_08s0056g00690.t01	Wine grape	nucleus	47.41	47.52
CDX72106	Canola	nucleus	46.12	47.03
CDY06947	Canola	nucleus	43.1	46.51
KRG94993	Soybean	nucleus	47.41	45.93
KRH66628	Soybean	nucleus	47.84	45.68
Bra016954.1-P	Field mustard	nucleus	43.1	45.45
CDY57580	Canola	nucleus	43.32	45.37
Solyc01g008970.2.1	Tomato	nucleus	36.64	45.21
AT3G56860.10	Thale cress	nucleus	46.12	44.77
AT2G41060.3	Thale cress	nucleus	43.32	44.57
PGSC0003DMT400058431	Potato	nucleus	44.83	42.45
VIT_06s0009g01180.t01	Wine grape	mitochondrion, nucleus, plastid	45.91	41.12
KRH14673	Soybean	nucleus	43.75	41.09
KRH73477	Soybean	nucleus	43.32	40.52
CDY47382	Canola	golgi, plastid	32.11	35.82
KXG30578	Sorghum	nucleus	25.43	31.72
EES03272	Sorghum	nucleus	29.74	31.01
EES12939	Sorghum	nucleus	32.97	29.03
OQU90054	Sorghum	cytosol, mitochondrion, nucleus	4.74	27.85
EES10068	Sorghum	nucleus	23.49	25.29
EES01076	Sorghum	nucleus	15.95	21.2
EER88542	Sorghum	nucleus	18.32	20.53
EES01849	Sorghum	nucleus	11.21	19.85
EES06526	Sorghum	nucleus	16.59	19.69
EER90058	Sorghum	plastid	10.99	17.83
OQU85520	Sorghum	nucleus, plastid	10.78	16.95
KXG30724	Sorghum	plastid	10.99	16.45
KXG34100	Sorghum	cytosol	12.5	16.11
EER95048	Sorghum	cytosol, nucleus, plastid	10.34	15.48
OQU83904	Sorghum	nucleus	14.66	15.11
EER97452	Sorghum	nucleus	15.3	15.07
OQU76075	Sorghum	plastid	11.42	15.01
EER98147	Sorghum	nucleus	14.66	15.01
EER96020	Sorghum	nucleus	14.66	14.95
OQU81002	Sorghum	nucleus	10.78	14.93
KXG38359	Sorghum	nucleus	14.44	14.79
EES02078	Sorghum	nucleus	10.34	14.2
KXG37469	Sorghum	cytosol	8.84	13.53
EER95824	Sorghum	cytosol	10.99	13.39

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	EntrezGene:8074505	UniProt:C5XGI6	ncoils:Coil	EnsemblPlants:EES02736
ProteinID:EES02736	ProteinID:EES02736.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44578
PANTHER:PTHR44578:SF4	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	EnsemblPlantsGene:SORBI_3003G122500	SUPFAM:SSF54928
unigene:Sbi.9935	UniParc:UPI0001A84EA6	RefSeq:XP_002457616.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:-:11146057..11150644

Molecular Weight (calculated)

47082.8 Da

IEP (calculated)

6.025

GRAVY (calculated)

-0.202

Length

464 amino acids

Sequence
(BLAST)

001: MGKKRKLEPK SAAAVKPVKA SQTTTKASSA AATAKAAGLS AVLAPAEVAM EKLPQGAGGE GEEVEEEIEE EVEVEEEVEV EEEDGEGDPA SIQALLDSFP
101: KDQLVELLRD AAVAHGDVLS AIRHVADADP AQRKIFVHGL GWDATTDTLS EAFGPYGDIE DLRVVTDRNT GKCKGYGFIL FRHRSGARAA LREPQKKIGN
201: RSTACQLASV GPVPGGAPNS AGAVPAPAQL HLPPVSEYTQ RKIFVSNVGA DIDPKKLLQF FARYGEIEEG PLGLDKVTGK PKGFALFVYK TIESAKKALE
301: EPHKHFDGVV LHCQKAIDGP KPNKLGGAGG FFGAGASSGG KGFPGYGATS HSLPGTVGIV QPMSPLAPGL ASLPGGISAA PGVDPALGQA LTALLATQQG
401: AGLNLTSILG VGANGSGLPP QGATGALGGS GVPGMQGGYM GGYGGSGGYG GAASGGPGRN YMGH

Best Arabidopsis Sequence Match ( AT3G56860.9 )
(BLAST)

001: MTKKRKLEGE ESNEAEEPSQ KLKQTPEEEQ QLVIKNQDNQ GDVEEVEYEE VEEEQEEEVE DDDDEDDGDE NEDQTDGNRI EAAATSGSGN QEDDDDEPIQ
101: DLLEPFSKEQ VLSLLKEAAE KHVDVANRIR EVADEDPVHR KIFVHGLGWD TKTETLIEAF KQYGEIEDCK AVFDKISGKS KGYGFILYKS RSGARNALKQ
201: PQKKIGSRMT ACQLASKGPV FGGAPIAAAA VSAPAQHSNS EHTQKKIYVS NVGAELDPQK LLMFFSKFGE IEEGPLGLDK YTGRPKGFCL FVYKSSESAK
301: RALEEPHKTF EGHILHCQKA IDGPKPGKQQ QHHHNPHAYN NPRYQRNDNN GYGPPGGHGH LMAGNPAGMG GPTAQVINPA IGQALTALLA SQGAGLAFNP
401: AIGQALLGSL GTAAGVNPGN GVGMPTGYGT QAMAPGTMPG YGTQPGLQGG YQTPQPGQGG TSRGQHGVGP YGTPYMGH

Arabidopsis Description

UBA2AUBP1-associated protein 2A [Source:UniProtKB/Swiss-Prot;Acc:Q9LES2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.