Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d052820_P001 | Maize | extracellular, mitochondrion, plasma membrane | 78.81 | 68.93 |
| TraesCS7A01G282600.1 | Wheat | cytosol | 54.93 | 52.57 |
| TraesCS7D01G281300.1 | Wheat | nucleus | 55.52 | 52.39 |
| HORVU7Hr1G060930.1 | Barley | plasma membrane | 54.63 | 51.69 |
| TraesCS7B01G178300.1 | Wheat | nucleus | 54.03 | 50.84 |
| VIT_19s0015g00920.t01 | Wine grape | nucleus | 47.46 | 45.69 |
| VIT_18s0117g00150.t01 | Wine grape | nucleus | 46.57 | 43.45 |
| KRH17717 | Soybean | nucleus | 44.18 | 42.05 |
| VIT_12s0057g01280.t01 | Wine grape | nucleus | 31.64 | 41.09 |
| EES01076 | Sorghum | nucleus | 42.69 | 40.97 |
| AT3G13224.2 | Thale cress | nucleus | 42.99 | 40.22 |
| PGSC0003DMT400044868 | Potato | nucleus | 40.6 | 39.77 |
| Bra039380.1-P | Field mustard | nucleus | 42.69 | 39.5 |
| CDY24201 | Canola | nucleus | 42.69 | 39.5 |
| CDY43360 | Canola | nucleus | 42.69 | 39.5 |
| Solyc07g045240.2.1 | Tomato | nucleus | 40.3 | 39.36 |
| GSMUA_Achr9P12880_001 | Banana | cytosol | 24.48 | 35.65 |
| OQU90054 | Sorghum | cytosol, mitochondrion, nucleus | 7.16 | 30.38 |
| EES06526 | Sorghum | nucleus | 34.33 | 29.41 |
| Os08t0492100-02 | Rice | nucleus | 37.01 | 28.44 |
| EER88542 | Sorghum | nucleus | 34.63 | 28.02 |
| Solyc12g035280.1.1 | Tomato | cytosol, nucleus, plastid | 30.75 | 27.76 |
| PGSC0003DMT400044866 | Potato | extracellular | 40.6 | 25.47 |
| EER98147 | Sorghum | nucleus | 25.07 | 18.54 |
| EER96020 | Sorghum | nucleus | 25.07 | 18.46 |
| KXG38359 | Sorghum | nucleus | 24.78 | 18.32 |
| EER95824 | Sorghum | cytosol | 20.0 | 17.59 |
| KXG34100 | Sorghum | cytosol | 18.51 | 17.22 |
| EER97452 | Sorghum | nucleus | 24.18 | 17.2 |
| OQU83904 | Sorghum | nucleus | 22.99 | 17.11 |
| KXG37469 | Sorghum | cytosol | 14.93 | 16.5 |
| EES01849 | Sorghum | nucleus | 11.64 | 14.89 |
| EES03272 | Sorghum | nucleus | 14.93 | 11.24 |
| OQU85520 | Sorghum | nucleus, plastid | 9.55 | 10.85 |
| EES02736 | Sorghum | plastid | 14.93 | 10.78 |
| EER90058 | Sorghum | plastid | 8.96 | 10.49 |
| KXG30724 | Sorghum | plastid | 9.55 | 10.32 |
| EES02078 | Sorghum | nucleus | 9.85 | 9.76 |
| EER95048 | Sorghum | cytosol, nucleus, plastid | 8.96 | 9.68 |
| KXG30578 | Sorghum | nucleus | 10.45 | 9.41 |
| EES10068 | Sorghum | nucleus | 11.64 | 9.05 |
| EES12939 | Sorghum | nucleus | 13.43 | 8.54 |
| OQU76075 | Sorghum | plastid | 8.96 | 8.5 |
Protein Annotations
| EnsemblPlants:OQU81002 | EnsemblPlantsGene:SORBI_3007G221300 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR45276 | PFAM:PF00076 | PFscan:PS50102 | ProteinID:OQU81002 | ProteinID:OQU81002.1 | SEG:seg |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000B8BA24E | UniProt:A0A1Z5RB72 | MapMan:35.1 | : |
Description
hypothetical protein
Coordinates
chr7:+:64946544..64949035
Molecular Weight (calculated)
36114.1 Da
IEP (calculated)
8.873
GRAVY (calculated)
-0.490
Length
335 amino acids
Sequence
(BLAST)
(BLAST)
001: MTDVRSQRAT QATYVRHFGQ YGEIVDSVIM KDRYTSHPRG FGFITYSNPA VVNKVIEDKH VINGKEVEIK RTVPKSSVQS SSKDFKTKRY YFFARYGTVV
101: DHQIMFDHET KCSRGFGFIV FASEQVVDDL LANGNMIDLA SSKMKMSTKG KCILLFQMEI KKAEPKKSSN PPPPPPAAHG RNTRSAYDSV SRDYPAADNF
201: GGMASAYGNY KGGFGGRLSN YGGIGDFGGA YGRYYAGLGG YGAASSFGYL DRFGLYGRCF GGSYASIDLS GYRCGGDDES FGALGNSGFG GDADESFGGG
301: GSYGFSGTAY GGAYDPTLGG YGSTSTRDMN RGELH
101: DHQIMFDHET KCSRGFGFIV FASEQVVDDL LANGNMIDLA SSKMKMSTKG KCILLFQMEI KKAEPKKSSN PPPPPPAAHG RNTRSAYDSV SRDYPAADNF
201: GGMASAYGNY KGGFGGRLSN YGGIGDFGGA YGRYYAGLGG YGAASSFGYL DRFGLYGRCF GGSYASIDLS GYRCGGDDES FGALGNSGFG GDADESFGGG
301: GSYGFSGTAY GGAYDPTLGG YGSTSTRDMN RGELH
001: MGSRSRNDNF QSGDGASPGK IFIGGLHKDT TNTVFNKHFG KYGEITDSVI MRDRHTGQPR GFGFITFADP SVVDKVIEDT HVINGKQVEI KRTIPKGAGG
101: NQSKDIKTKK IFVGGIPSTV TEDELKDFFA KYGNVVEHQV IRDHETNRSR GFGFVIFDSE EVVDELLSKG NMIDMADTQV EIKKAEPKKS LNRSPPSYGS
201: HPRGRSSNDS YASYGGPYGG FDGGYGHPPG PIRSHGGPAS RYAGGYGYGR GSVGPEFGGG YNNYGGGSLG GYRNEPPLGY SSRFGPYGSG FGGEGYGRGG
301: EGAYLGYPRG GGEGYGGYGG PGYGGAYESG GPGGSYEGAG GPYGRGYSSS SRYHPYAR
101: NQSKDIKTKK IFVGGIPSTV TEDELKDFFA KYGNVVEHQV IRDHETNRSR GFGFVIFDSE EVVDELLSKG NMIDMADTQV EIKKAEPKKS LNRSPPSYGS
201: HPRGRSSNDS YASYGGPYGG FDGGYGHPPG PIRSHGGPAS RYAGGYGYGR GSVGPEFGGG YNNYGGGSLG GYRNEPPLGY SSRFGPYGSG FGGEGYGRGG
301: EGAYLGYPRG GGEGYGGYGG PGYGGAYESG GPGGSYEGAG GPYGRGYSSS SRYHPYAR
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LHL2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.