Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 1
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES01849 | Sorghum | nucleus | 31.65 | 9.54 |
| EER90058 | Sorghum | plastid | 32.91 | 9.09 |
| KXG30724 | Sorghum | plastid | 34.18 | 8.71 |
| EER95048 | Sorghum | cytosol, nucleus, plastid | 31.65 | 8.06 |
| KXG37469 | Sorghum | cytosol | 30.38 | 7.92 |
| EER95824 | Sorghum | cytosol | 37.97 | 7.87 |
| OQU85520 | Sorghum | nucleus, plastid | 29.11 | 7.8 |
| EES01076 | Sorghum | nucleus | 34.18 | 7.74 |
| OQU76075 | Sorghum | plastid | 34.18 | 7.65 |
| KXG30578 | Sorghum | nucleus | 35.44 | 7.53 |
| EES06526 | Sorghum | nucleus | 36.71 | 7.42 |
| EER88542 | Sorghum | nucleus | 37.97 | 7.25 |
| OQU81002 | Sorghum | nucleus | 30.38 | 7.16 |
| EES02078 | Sorghum | nucleus | 30.38 | 7.1 |
| EER98147 | Sorghum | nucleus | 39.24 | 6.84 |
| EER96020 | Sorghum | nucleus | 39.24 | 6.81 |
| KXG38359 | Sorghum | nucleus | 37.97 | 6.62 |
| EER97452 | Sorghum | nucleus | 36.71 | 6.16 |
| KXG34100 | Sorghum | cytosol | 26.58 | 5.83 |
| OQU83904 | Sorghum | nucleus | 31.65 | 5.56 |
| EES03272 | Sorghum | nucleus | 30.38 | 5.39 |
| EES10068 | Sorghum | nucleus | 29.11 | 5.34 |
| EES12939 | Sorghum | nucleus | 32.91 | 4.93 |
| EES02736 | Sorghum | plastid | 27.85 | 4.74 |
| CDX69277 | Canola | mitochondrion | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:OQU90054 | EnsemblPlantsGene:SORBI_3002G328550 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR45276 | PANTHER:PTHR45276:SF1 | PFAM:PF00076 | PFscan:PS50102 | ProteinID:OQU90054 | ProteinID:OQU90054.1 |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0009DC8F9C | UniProt:A0A1W0W6K9 | MapMan:35.2 | : |
Description
hypothetical protein
Coordinates
chr2:-:69796503..69797692
Molecular Weight (calculated)
8748.5 Da
IEP (calculated)
8.095
GRAVY (calculated)
-0.294
Length
79 amino acids
Sequence
(BLAST)
(BLAST)
1: MKLLEINGRL FVAGIAPGTS DADIGRHFCR YGEVSDVCQP KDRFTGCPRG FVFVQFPRPI DAGRALADPH HVINGQHDR
001: MGSRSRNDNF QSGDGASPGK IFIGGLHKDT TNTVFNKHFG KYGEITDSVI MRDRHTGQPR GFGFITFADP SVVDKVIEDT HVINGKQVEI KRTIPKGAGG
101: NQSKDIKTKK IFVGGIPSTV TEDELKDFFA KYGNVVEHQV IRDHETNRSR GFGFVIFDSE EVVDELLSKG NMIDMADTQV SLYKWGLEFW FMMTYLSWFQ
201: FDIFSLFLSL YTFNLVRILP TSLPNVRSLS Q
101: NQSKDIKTKK IFVGGIPSTV TEDELKDFFA KYGNVVEHQV IRDHETNRSR GFGFVIFDSE EVVDELLSKG NMIDMADTQV SLYKWGLEFW FMMTYLSWFQ
201: FDIFSLFLSL YTFNLVRILP TSLPNVRSLS Q
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LHL2]
SUBAcon: [peroxisome,nucleus,cytosol]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.