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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • plastid 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:nucleus
MultiLoc:nucleus
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os11t0637700-01 Rice plasma membrane 64.0 61.67
HORVU0Hr1G008280.1 Barley nucleus 61.33 59.61
TraesCS4A01G150600.1 Wheat nucleus 61.33 59.61
TraesCSU01G068500.1 Wheat nucleus 60.89 59.18
TraesCS4D01G152200.1 Wheat nucleus 60.89 59.18
GSMUA_Achr10P... Banana nucleus 48.0 49.09
EER98147 Sorghum nucleus 47.33 47.02
Solyc04g014820.2.1 Tomato cytosol 27.78 46.64
EER96020 Sorghum nucleus 47.11 46.59
GSMUA_Achr4P33100_001 Banana nucleus 45.56 46.38
VIT_19s0090g01660.t01 Wine grape nucleus 49.11 46.23
GSMUA_Achr10P... Banana nucleus 47.11 46.09
VIT_12s0057g00480.t01 Wine grape nucleus 48.89 46.03
PGSC0003DMT400037271 Potato nucleus 48.0 45.96
KRH74025 Soybean nucleus 48.22 45.68
KRH14098 Soybean nucleus 48.0 45.09
KRG98573 Soybean nucleus 47.78 44.89
KRH46297 Soybean nucleus 47.33 44.47
EER97452 Sorghum nucleus 46.44 44.37
Solyc10g006050.2.1 Tomato nucleus 42.67 44.34
PGSC0003DMT400076643 Potato nucleus 46.22 43.88
KRH73860 Soybean nucleus 46.22 43.61
GSMUA_Achr6P10970_001 Banana nucleus 48.44 43.6
KRH14284 Soybean nucleus 46.22 43.51
Bra001267.1-P Field mustard nucleus 44.89 42.89
CDX74030 Canola nucleus 44.89 42.8
Solyc07g048030.2.1 Tomato nucleus 41.56 42.79
CDY07975 Canola nucleus 44.67 42.68
CDY22136 Canola nucleus 45.33 41.98
Bra040031.1-P Field mustard nucleus 45.33 41.98
Solyc12g014600.1.1 Tomato nucleus 40.67 41.88
AT3G07810.2 Thale cress nucleus 45.56 41.41
CDY66272 Canola nucleus 44.89 41.31
CDY35966 Canola nucleus 45.33 41.3
PGSC0003DMT400034757 Potato nucleus 42.89 41.24
Bra029681.1-P Field mustard nucleus 45.56 40.92
Solyc11g012470.1.1 Tomato nucleus 38.89 40.89
PGSC0003DMT400074192 Potato nucleus 42.22 40.08
CDY50131 Canola nucleus 33.56 39.53
PGSC0003DMT400060554 Potato nucleus 40.67 38.94
CDY46690 Canola nucleus 36.89 38.78
Bra021062.1-P Field mustard nucleus 33.78 38.78
Solyc12g006180.1.1 Tomato nucleus 37.56 38.58
CDY17719 Canola cytoskeleton, cytosol, nucleus 35.56 38.55
AT4G26650.1 Thale cress nucleus 38.89 38.46
Bra024928.1-P Field mustard nucleus 35.56 38.1
Bra028973.1-P Field mustard nucleus 36.44 37.88
CDX94301 Canola nucleus 37.11 37.78
Bra017475.1-P Field mustard nucleus 35.78 37.7
CDY41059 Canola nucleus 35.78 37.7
CDX92807 Canola nucleus 37.56 37.56
CDY11989 Canola nucleus 36.0 37.5
CDY36753 Canola nucleus 36.22 37.47
CDX77783 Canola nucleus 35.33 37.41
CDY46689 Canola nucleus 38.22 37.15
Bra019094.1-P Field mustard nucleus 38.22 37.15
CDY58169 Canola cytosol, nucleus, plasma membrane 33.78 36.98
Bra026413.1-P Field mustard nucleus 34.67 36.88
AT5G47620.4 Thale cress cytoskeleton, cytosol, nucleus 36.44 36.2
CDX89316 Canola endoplasmic reticulum 35.56 35.79
Bra022145.1-P Field mustard nucleus 35.78 35.0
CDX75170 Canola extracellular 12.67 34.97
AT5G55550.10 Thale cress nucleus 39.33 34.91
CDY28918 Canola mitochondrion 35.78 33.26
KXG38359 Sorghum nucleus 32.44 32.23
GSMUA_Achr3P02300_001 Banana nucleus 47.78 31.66
OQU90054 Sorghum cytosol, mitochondrion, nucleus 5.56 31.65
EES01076 Sorghum nucleus 24.0 30.95
CDY25957 Canola nucleus 36.22 29.48
EES06526 Sorghum nucleus 22.67 26.09
EER95824 Sorghum cytosol 21.56 25.46
EER88542 Sorghum nucleus 23.33 25.36
KXG37469 Sorghum cytosol 16.89 25.08
CDY40554 Canola nucleus 35.56 24.39
OQU81002 Sorghum nucleus 17.11 22.99
KXG34100 Sorghum cytosol 18.0 22.5
EES01849 Sorghum nucleus 10.89 18.7
EES03272 Sorghum nucleus 18.0 18.2
EER90058 Sorghum plastid 10.44 16.43
OQU85520 Sorghum nucleus, plastid 10.22 15.59
KXG30724 Sorghum plastid 10.44 15.16
EES02736 Sorghum plastid 15.11 14.66
KXG30578 Sorghum nucleus 11.11 13.44
EER95048 Sorghum cytosol, nucleus, plastid 9.11 13.23
EES02078 Sorghum nucleus 9.78 13.02
OQU76075 Sorghum plastid 10.0 12.75
EES12939 Sorghum nucleus 14.67 12.52
EES10068 Sorghum nucleus 11.56 12.06
Protein Annotations
Gene3D:3.30.70.330MapMan:35.1EntrezGene:8079156UniProt:A0A1Z5RJJ1GO:GO:0003674GO:GO:0003676
GO:GO:0003723GO:GO:0005488InterPro:IPR000504InterPro:IPR012677InterPro:Nucleotide-bd_a/b_plait_sfEnsemblPlants:OQU83904
ProteinID:OQU83904ProteinID:OQU83904.1PFAM:PF00076PFscan:PS50102PANTHER:PTHR44291PANTHER:PTHR44291:SF2
InterPro:RBD_domain_sfInterPro:RRM_domSMART:SM00360EnsemblPlantsGene:SORBI_3005G197000SUPFAM:SSF54928UniParc:UPI0001A865A5
RefSeq:XP_002449904.1SEG:seg::::
Description
hypothetical protein
Coordinates
chr5:+:68219120..68220616
Molecular Weight (calculated)
49132.4 Da
IEP (calculated)
8.180
GRAVY (calculated)
-0.479
Length
450 amino acids
Sequence
(BLAST)
001: MEADAMKLFI GGISWDTNED HLLKYFKKYG EVEEAIVMRD RATGRSRGFG FIMFADPAVA KHVIMEKHMI DGRMVEAKKA IARDDHHSLN NIHGSAHGLQ
101: RPKHRKKIFV GGLASNVTKE DVIKHFKQFG TIIDVVVVYD HHTQRPRGFG FITYDSEDAV HRALIKTFQK LKGKMVEVKR AIRKEPSPIP SMCSPINGFN
201: YVTGRANSFL NGYTQHYNMS PLGGYGMRMD ECFGLLSGGN TNNGYPSFGG SHGIGMNFDT SMNPCTESGS SFNSGIQHGW HLNPYYNGNL GGFNNSVSYG
301: GVSGNNGLLF DSLVHNLWDI FGLNHSSSST SSNFFVPFGN GDLSGIGNNN VNWGNPHHVP APGANNCSVY CTGNFCYGSS ETNFGQGSSV YGRNIGSSGD
401: NNLNQSTSGY ARNFGDSSVG GGSIYGDTTW TSRSFEHDVT KMNSTGHMGH
Best Arabidopsis Sequence Match ( AT3G07810.1 )
(BLAST)
001: MQSDNGKLFI GGISWDTNEE RLKEYFSSFG EVIEAVILKD RTTGRARGFG FVVFADPAVA EIVITEKHNI DGRLVEAKKA VPRDDQNMVN RSNSSSIQGS
101: PGGPGRTRKI FVGGLPSSVT ESDFKTYFEQ FGTTTDVVVM YDHNTQRPRG FGFITYDSEE AVEKVLLKTF HELNGKMVEV KRAVPKELSP GPSRSPLGAG
201: YSYGVNRVNN LLNGYAQGFN PAAVGGYGLR MDGRFSPVGA GRSGFANYSS GYGMNVNFDQ GLPTGFTGGT NYNGNVDYGR GMSPYYIGNT NRFGPAVGYE
301: GGNGGGNSSF FSSVTRNLWG NNGGLNYNNN NTNSNSNTYM GGSSSGNNTL SGPFGNSGVN WGAPGGGNNA VSNENVKFGY GGNGESGFGL GTGGYAARNP
401: GANKAAPSSS FSSASATNNT GYDTAGLAEF YGNGAVYSDP TWRSPTPETE GPAPFSYGIG GGVPSSDVSA RSSSPGYVGS YSVNKRQPNR GIAT
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JFN7]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.