Factsheet for Solyc11g012470.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400034757	Potato	nucleus	97.2	88.89
Solyc04g014820.2.1	Tomato	cytosol	47.66	76.12
Solyc10g006050.2.1	Tomato	nucleus	57.24	56.58
Solyc07g048030.2.1	Tomato	nucleus	57.24	56.06
Solyc12g014600.1.1	Tomato	nucleus	56.07	54.92
Solyc12g006180.1.1	Tomato	nucleus	54.67	53.42
GSMUA_Achr10P...	Banana	nucleus	54.44	50.65
GSMUA_Achr10P...	Banana	nucleus	51.64	50.23
HORVU0Hr1G008280.1	Barley	nucleus	54.21	50.11
TraesCS4A01G150600.1	Wheat	nucleus	53.97	49.89
TraesCS4D01G152200.1	Wheat	nucleus	53.97	49.89
Os11t0637700-01	Rice	plasma membrane	53.97	49.46
TraesCSU01G068500.1	Wheat	nucleus	53.5	49.46
Os07t0584500-01	Rice	nucleus	52.8	47.88
GSMUA_Achr6P10970_001	Banana	nucleus	55.61	47.6
Zm00001d019079_P001	Maize	cytosol	49.53	47.32
TraesCS2B01G216600.2	Wheat	cytosol	51.64	46.92
TraesCS2D01G197500.2	Wheat	nucleus	51.4	46.81
GSMUA_Achr4P33100_001	Banana	nucleus	48.13	46.61
Zm00001d007772_P001	Maize	nucleus	48.83	46.55
EER98147	Sorghum	nucleus	49.07	46.36
EER96020	Sorghum	nucleus	49.07	46.15
EER97452	Sorghum	nucleus	50.7	46.07
Zm00001d019084_P002	Maize	nucleus	47.9	45.15
Zm00001d006704_P002	Maize	nucleus	50.23	44.42
TraesCS2A01G190400.1	Wheat	plastid	51.17	41.24
Zm00001d019086_P001	Maize	nucleus	49.53	39.85
Zm00001d021950_P007	Maize	endoplasmic reticulum, nucleus	50.0	39.56
OQU83904	Sorghum	nucleus	40.89	38.89
GSMUA_Achr3P02300_001	Banana	nucleus	52.34	32.99
Solyc03g005680.2.1	Tomato	nucleus	32.71	32.79
Solyc09g072790.2.1	Tomato	nucleus	30.14	32.74
Solyc03g121710.2.1	Tomato	nucleus	20.33	32.34
Solyc09g090520.2.1	Tomato	nucleus	35.75	32.21
Solyc07g045240.2.1	Tomato	nucleus	25.7	32.07
Solyc04g077520.2.1	Tomato	nucleus	24.07	30.21
Solyc02g093340.2.1	Tomato	nucleus	25.47	28.02
Solyc06g062740.1.1	Tomato	cytosol	12.62	27.41
Solyc06g062730.1.1	Tomato	nucleus	20.33	23.71
Solyc02g090910.2.1	Tomato	nucleus	20.79	23.67
Solyc02g064540.1.1	Tomato	nucleus	17.99	20.81
Solyc12g035280.1.1	Tomato	cytosol, nucleus, plastid	17.99	20.75
Solyc11g044470.1.1	Tomato	mitochondrion, nucleus, plastid	10.28	16.86
Solyc02g021560.2.1	Tomato	nucleus	15.89	15.78
Solyc10g081330.1.1	Tomato	nucleus	13.55	13.91
Solyc04g082770.2.1	Tomato	cytosol, extracellular, nucleus, plastid	7.01	12.45
Solyc02g082270.2.1	Tomato	nucleus	8.18	12.41
Solyc04g011560.2.1	Tomato	nucleus	12.85	11.7
Solyc04g049920.2.1	Tomato	nucleus	6.54	11.62
Solyc01g008970.2.1	Tomato	nucleus	9.58	10.9
Solyc04g074310.2.1	Tomato	nucleus	7.01	10.24
Solyc12g014210.1.1	Tomato	nucleus	7.48	9.55

Protein Annotations

EnsemblPlants:Solyc11g012470.1.1	EnsemblPlantsGene:Solyc11g012470.1	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:DAZAP1_RRM2	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR44291	PANTHER:PTHR44291:SF2	PFAM:PF00076	PFscan:PS50102	SEG:seg
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002769F76	UniProt:K4D651	MapMan:35.1	:

Description

No Description!

Coordinates

chr11:-:5302951..5305498

Molecular Weight (calculated)

45133.9 Da

IEP (calculated)

9.108

GRAVY (calculated)

-0.490

Length

428 amino acids

Sequence
(BLAST)

001: MKDRITGRAR GFGFVVFADP SVAERVVKEK HIIDGRTVEA KKAVPRDDQH ITRNNGSMQG SPGPARTKKI FVGGLASSVT ESDFKNYFDQ FGTITDVVVM
101: YDHNTQRPRG FGFITFDSEE AVDKVLYKAF HELNGKMVEV KRAVPKELSP SPARSPFNGQ NYGLNRVNNL LNAYTQGYVP SSIGNYGMRM EGRYSPLTAG
201: RNGYSSFNPA DFNLPSGMDS TLNLNYGGNG NFGSNYGRGF NSLYNGNSNR FNGPVGFAPG RVGSSSMLNS VGWNLWDNES LNYGTNSANS TDFVGSGSGA
301: AGYGTLGGLG TIWGSSSISG QGGGNGSFGT GNIANSGEAV GTGYGRNSGS NAVNTSPYSS AKDIPAGAFG NLYGNTVGAS FYEDSAWRST SPELDDSASF
401: GYGLGNAESL GYVGGYSVAN RSNKGIAA

Best Arabidopsis Sequence Match ( AT3G07810.1 )
(BLAST)

001: MQSDNGKLFI GGISWDTNEE RLKEYFSSFG EVIEAVILKD RTTGRARGFG FVVFADPAVA EIVITEKHNI DGRLVEAKKA VPRDDQNMVN RSNSSSIQGS
101: PGGPGRTRKI FVGGLPSSVT ESDFKTYFEQ FGTTTDVVVM YDHNTQRPRG FGFITYDSEE AVEKVLLKTF HELNGKMVEV KRAVPKELSP GPSRSPLGAG
201: YSYGVNRVNN LLNGYAQGFN PAAVGGYGLR MDGRFSPVGA GRSGFANYSS GYGMNVNFDQ GLPTGFTGGT NYNGNVDYGR GMSPYYIGNT NRFGPAVGYE
301: GGNGGGNSSF FSSVTRNLWG NNGGLNYNNN NTNSNSNTYM GGSSSGNNTL SGPFGNSGVN WGAPGGGNNA VSNENVKFGY GGNGESGFGL GTGGYAARNP
401: GANKAAPSSS FSSASATNNT GYDTAGLAEF YGNGAVYSDP TWRSPTPETE GPAPFSYGIG GGVPSSDVSA RSSSPGYVGS YSVNKRQPNR GIAT

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JFN7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.