Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d019079_P001 | Maize | cytosol | 93.1 | 93.3 |
| EER96020 | Sorghum | nucleus | 93.76 | 92.53 |
| EER98147 | Sorghum | nucleus | 93.32 | 92.49 |
| Zm00001d019084_P002 | Maize | nucleus | 90.2 | 89.21 |
| Os07t0584500-01 | Rice | nucleus | 82.18 | 78.18 |
| Zm00001d006704_P002 | Maize | nucleus | 82.18 | 76.24 |
| TraesCS2B01G216600.2 | Wheat | cytosol | 78.84 | 75.16 |
| TraesCS2D01G197500.2 | Wheat | nucleus | 78.62 | 75.11 |
| Zm00001d019086_P001 | Maize | nucleus | 84.41 | 71.24 |
| Zm00001d021950_P007 | Maize | endoplasmic reticulum, nucleus | 81.96 | 68.02 |
| TraesCS2A01G190400.1 | Wheat | plastid | 78.4 | 66.29 |
| GSMUA_Achr10P... | Banana | nucleus | 55.46 | 56.59 |
| GSMUA_Achr4P33100_001 | Banana | nucleus | 53.9 | 54.75 |
| KRH74025 | Soybean | nucleus | 57.91 | 54.74 |
| Solyc04g014820.2.1 | Tomato | cytosol | 32.52 | 54.48 |
| GSMUA_Achr10P... | Banana | nucleus | 55.68 | 54.35 |
| VIT_12s0057g00480.t01 | Wine grape | nucleus | 57.46 | 53.97 |
| PGSC0003DMT400037271 | Potato | nucleus | 56.35 | 53.83 |
| KRH14098 | Soybean | nucleus | 57.24 | 53.65 |
| Solyc07g048030.2.1 | Tomato | nucleus | 51.89 | 53.32 |
| VIT_19s0090g01660.t01 | Wine grape | nucleus | 56.57 | 53.14 |
| KRG98573 | Soybean | nucleus | 55.68 | 52.19 |
| Solyc10g006050.2.1 | Tomato | nucleus | 50.11 | 51.96 |
| GSMUA_Achr6P10970_001 | Banana | nucleus | 57.68 | 51.8 |
| PGSC0003DMT400074192 | Potato | nucleus | 54.57 | 51.69 |
| PGSC0003DMT400076643 | Potato | nucleus | 54.57 | 51.69 |
| KRH46297 | Soybean | nucleus | 55.01 | 51.57 |
| KRH73860 | Soybean | nucleus | 54.57 | 51.36 |
| Solyc12g006180.1.1 | Tomato | nucleus | 49.0 | 50.23 |
| PGSC0003DMT400034757 | Potato | nucleus | 52.34 | 50.21 |
| Solyc12g014600.1.1 | Tomato | nucleus | 48.78 | 50.11 |
| KRH14284 | Soybean | nucleus | 53.23 | 50.0 |
| Solyc11g012470.1.1 | Tomato | nucleus | 46.55 | 48.83 |
| CDY07975 | Canola | nucleus | 51.0 | 48.62 |
| Bra040031.1-P | Field mustard | nucleus | 52.56 | 48.56 |
| CDY22136 | Canola | nucleus | 52.56 | 48.56 |
| CDX74030 | Canola | nucleus | 51.0 | 48.52 |
| CDY66272 | Canola | nucleus | 52.56 | 48.26 |
| Bra001267.1-P | Field mustard | nucleus | 50.56 | 48.2 |
| PGSC0003DMT400060554 | Potato | nucleus | 50.33 | 48.09 |
| AT3G07810.2 | Thale cress | nucleus | 53.01 | 48.08 |
| CDY35966 | Canola | nucleus | 52.78 | 47.98 |
| Bra029681.1-P | Field mustard | nucleus | 53.45 | 47.9 |
| CDY46690 | Canola | nucleus | 44.32 | 46.5 |
| Bra028973.1-P | Field mustard | nucleus | 44.77 | 46.42 |
| CDX94301 | Canola | nucleus | 45.43 | 46.15 |
| CDY36753 | Canola | nucleus | 44.54 | 45.98 |
| AT4G26650.1 | Thale cress | nucleus | 46.55 | 45.93 |
| CDY11989 | Canola | nucleus | 44.1 | 45.83 |
| CDX92807 | Canola | nucleus | 45.66 | 45.56 |
| CDX89316 | Canola | endoplasmic reticulum | 45.21 | 45.41 |
| CDX77783 | Canola | nucleus | 42.76 | 45.18 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 41.43 | 44.82 |
| Bra024928.1-P | Field mustard | nucleus | 41.65 | 44.52 |
| Bra017475.1-P | Field mustard | nucleus | 42.32 | 44.5 |
| CDY41059 | Canola | nucleus | 42.32 | 44.5 |
| Bra026413.1-P | Field mustard | nucleus | 41.87 | 44.44 |
| Bra019094.1-P | Field mustard | nucleus | 45.66 | 44.28 |
| CDY46689 | Canola | nucleus | 45.66 | 44.28 |
| CDY50131 | Canola | nucleus | 37.64 | 44.24 |
| Bra021062.1-P | Field mustard | nucleus | 38.53 | 44.13 |
| AT5G47620.4 | Thale cress | cytoskeleton, cytosol, nucleus | 44.1 | 43.71 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 38.53 | 42.09 |
| Bra022145.1-P | Field mustard | nucleus | 42.98 | 41.96 |
| AT5G55550.10 | Thale cress | nucleus | 45.66 | 40.43 |
| CDY28918 | Canola | mitochondrion | 43.43 | 40.29 |
| GSMUA_Achr3P02300_001 | Banana | nucleus | 56.57 | 37.41 |
| CDX75170 | Canola | extracellular | 13.36 | 36.81 |
| Zm00001d032739_P001 | Maize | nucleus | 36.08 | 36.57 |
| Zm00001d034200_P001 | Maize | nucleus | 13.59 | 35.67 |
| CDY25957 | Canola | nucleus | 42.76 | 34.72 |
| Zm00001d014058_P002 | Maize | plastid | 36.97 | 34.44 |
| Zm00001d034201_P001 | Maize | nucleus | 18.04 | 32.27 |
| Zm00001d030579_P001 | Maize | mitochondrion | 24.94 | 32.18 |
| CDY40554 | Canola | nucleus | 42.98 | 29.42 |
| Zm00001d016349_P002 | Maize | nucleus | 24.94 | 29.17 |
| Zm00001d007839_P001 | Maize | cytosol | 23.39 | 28.38 |
| Zm00001d052820_P001 | Maize | extracellular, mitochondrion, plasma membrane | 24.05 | 28.2 |
| Zm00001d018730_P001 | Maize | nucleus | 23.39 | 28.07 |
| Zm00001d011885_P008 | Maize | cytosol | 22.27 | 27.78 |
| Zm00001d036966_P001 | Maize | nucleus, plasma membrane | 25.17 | 27.36 |
| Zm00001d046190_P001 | Maize | extracellular | 25.17 | 27.03 |
| Zm00001d052212_P001 | Maize | nucleus | 8.91 | 24.84 |
| Zm00001d053572_P002 | Maize | cytosol | 25.61 | 20.95 |
| Zm00001d042641_P001 | Maize | nucleus | 13.59 | 20.68 |
| Zm00001d044469_P003 | Maize | nucleus | 18.26 | 18.34 |
| Zm00001d042133_P003 | Maize | cytosol | 16.26 | 18.34 |
| Zm00001d047753_P001 | Maize | cytosol, mitochondrion, nucleus | 11.36 | 18.28 |
| Zm00001d028714_P001 | Maize | cytosol, nucleus, plasma membrane | 12.03 | 18.18 |
| Zm00001d036789_P001 | Maize | cytosol, mitochondrion, nucleus | 11.14 | 17.92 |
| Zm00001d011336_P002 | Maize | nucleus | 17.82 | 17.86 |
| Zm00001d012238_P003 | Maize | nucleus, plasma membrane, plastid | 13.36 | 17.65 |
| Zm00001d042042_P001 | Maize | nucleus | 12.69 | 16.76 |
| Zm00001d018103_P002 | Maize | plasma membrane | 11.8 | 16.67 |
| Zm00001d040344_P001 | Maize | extracellular, plasma membrane | 16.26 | 16.08 |
| Zm00001d017829_P002 | Maize | plastid | 11.8 | 15.36 |
| Zm00001d037209_P001 | Maize | plastid | 11.14 | 15.06 |
| Zm00001d046716_P001 | Maize | nucleus | 11.36 | 14.17 |
| Zm00001d002141_P006 | Maize | nucleus | 15.81 | 13.63 |
| Zm00001d026397_P001 | Maize | nucleus, plasma membrane | 15.81 | 13.63 |
| Zm00001d051627_P002 | Maize | plastid | 10.91 | 13.32 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | UniProt:A0A1D6F8R0 | InterPro:DAZAP1_RRM2 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | ProteinID:ONM27553.1 |
| ProteinID:ONM27554.1 | ProteinID:ONM27555.1 | ProteinID:ONM27556.1 | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44291 |
| PANTHER:PTHR44291:SF4 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI00022105B6 |
| EnsemblPlantsGene:Zm00001d007772 | EnsemblPlants:Zm00001d007772_P001 | EnsemblPlants:Zm00001d007772_T001 | SEG:seg | : | : |
Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Coordinates
chr2:+:239363225..239366610
Molecular Weight (calculated)
47881.7 Da
IEP (calculated)
8.601
GRAVY (calculated)
-0.460
Length
449 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAADHGKLF VGGISWETSE DRLREYFGRF GEVTEAVIMR DRSTGRARGF GFVVFADAAV AERVTTEKHM IDGRMVEAKK AVPRDDHSIV TKSNASSIGS
101: PGPGRTRKIF VGGLPSNVTE ADFRRYFEQF GVITDVVVMY DHNTQRPRGF GFITYDSEDA VDKALHKSFH ELNGKMVEVK RAVPKEQSPG PAARSPVGVG
201: QNYAMNRVHS FLNGFNQGYN PNPIGGYGIR VDGRYGLISG ARNGFSSFGP GYGMGMNVEG GLGGTFGASS GFISNSNGRQ MGSYFNASSN RLGSPIGYLG
301: LNDVPGSMLS SMSRNVWGNG SLNYPSNPTN MSAFASPRNG GQVSLPSDNW GGLPSAHGMD NISSLGSGNL GRGTGDNNFG LPSGSYGRNN STGTIGEPFS
401: AAGNTYEVNN RDTYGSSSIY GGTAWRFASS EVDMPSFVHD IGNVDPTIK
101: PGPGRTRKIF VGGLPSNVTE ADFRRYFEQF GVITDVVVMY DHNTQRPRGF GFITYDSEDA VDKALHKSFH ELNGKMVEVK RAVPKEQSPG PAARSPVGVG
201: QNYAMNRVHS FLNGFNQGYN PNPIGGYGIR VDGRYGLISG ARNGFSSFGP GYGMGMNVEG GLGGTFGASS GFISNSNGRQ MGSYFNASSN RLGSPIGYLG
301: LNDVPGSMLS SMSRNVWGNG SLNYPSNPTN MSAFASPRNG GQVSLPSDNW GGLPSAHGMD NISSLGSGNL GRGTGDNNFG LPSGSYGRNN STGTIGEPFS
401: AAGNTYEVNN RDTYGSSSIY GGTAWRFASS EVDMPSFVHD IGNVDPTIK
001: MEMESCKLFI GGISWETSED RLRDYFHSFG EVLEAVIMKD RATGRARGFG FVVFADPNVA ERVVLLKHII DGKIVEAKKA VPRDDHVVFN KSNSSLQGSP
101: GPSNSKKIFV GGLASSVTEA EFKKYFAQFG MITDVVVMYD HRTQRPRGFG FISYDSEEAV DKVLQKTFHE LNGKMVEVKL AVPKDMALNT MRNQMNVNSF
201: GTSRISSLLN EYTQGFSPSP ISGYGVKPEV RYSPAVGNRG GFSPFGHGYG IELNFEPNQT QNYGSGSSGG FGRPFSPGYA ASLGRFGSQM ESGGASVGNG
301: SVLNAAPKNH LWGNGGLGYM SNSPISRSSF SGNSGMSSLG SIGDNWGTVA RARSSYHGER GGVGLEAMRG VHVGGYSSGS SILEADSLYS DSMWLSLPAK
401: AEEGLGMGPL DFMSRGPAGY INRQPNGGIA A
101: GPSNSKKIFV GGLASSVTEA EFKKYFAQFG MITDVVVMYD HRTQRPRGFG FISYDSEEAV DKVLQKTFHE LNGKMVEVKL AVPKDMALNT MRNQMNVNSF
201: GTSRISSLLN EYTQGFSPSP ISGYGVKPEV RYSPAVGNRG GFSPFGHGYG IELNFEPNQT QNYGSGSSGG FGRPFSPGYA ASLGRFGSQM ESGGASVGNG
301: SVLNAAPKNH LWGNGGLGYM SNSPISRSSF SGNSGMSSLG SIGDNWGTVA RARSSYHGER GGVGLEAMRG VHVGGYSSGS SILEADSLYS DSMWLSLPAK
401: AEEGLGMGPL DFMSRGPAGY INRQPNGGIA A
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JYK6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.