Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040031.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDX74030 | Canola | nucleus | 87.24 | 89.83 |
| CDY07975 | Canola | nucleus | 86.63 | 89.38 |
| AT3G07810.2 | Thale cress | nucleus | 90.12 | 88.48 |
| CDY66272 | Canola | nucleus | 88.68 | 88.14 |
| CDY35966 | Canola | nucleus | 89.09 | 87.65 |
| GSMUA_Achr10P... | Banana | nucleus | 56.17 | 59.35 |
| GSMUA_Achr10P... | Banana | nucleus | 53.7 | 59.32 |
| HORVU0Hr1G008280.1 | Barley | nucleus | 53.7 | 56.37 |
| TraesCS4A01G150600.1 | Wheat | nucleus | 53.7 | 56.37 |
| TraesCS4D01G152200.1 | Wheat | nucleus | 53.7 | 56.37 |
| Os11t0637700-01 | Rice | plasma membrane | 53.91 | 56.1 |
| TraesCSU01G068500.1 | Wheat | nucleus | 53.29 | 55.94 |
| GSMUA_Achr6P10970_001 | Banana | nucleus | 57.2 | 55.6 |
| GSMUA_Achr4P33100_001 | Banana | nucleus | 48.97 | 53.85 |
| Zm00001d007772_P001 | Maize | nucleus | 48.56 | 52.56 |
| Zm00001d019079_P001 | Maize | cytosol | 47.53 | 51.56 |
| EER98147 | Sorghum | nucleus | 47.74 | 51.21 |
| EER96020 | Sorghum | nucleus | 47.53 | 50.77 |
| Os07t0584500-01 | Rice | nucleus | 48.97 | 50.42 |
| EER97452 | Sorghum | nucleus | 48.77 | 50.32 |
| TraesCS2B01G216600.2 | Wheat | cytosol | 48.77 | 50.32 |
| CDX94301 | Canola | nucleus | 45.68 | 50.23 |
| TraesCS2D01G197500.2 | Wheat | nucleus | 48.56 | 50.21 |
| Zm00001d019084_P002 | Maize | nucleus | 46.71 | 50.0 |
| CDX92807 | Canola | nucleus | 45.88 | 49.56 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 41.98 | 49.16 |
| CDY41059 | Canola | nucleus | 43.0 | 48.95 |
| CDX77783 | Canola | nucleus | 42.8 | 48.94 |
| CDY11989 | Canola | nucleus | 43.42 | 48.84 |
| CDY36753 | Canola | nucleus | 43.62 | 48.74 |
| Zm00001d006704_P002 | Maize | nucleus | 48.15 | 48.35 |
| CDY46689 | Canola | nucleus | 45.88 | 48.16 |
| CDX89316 | Canola | endoplasmic reticulum | 44.03 | 47.87 |
| CDY50131 | Canola | nucleus | 37.24 | 47.38 |
| CDY46690 | Canola | nucleus | 41.15 | 46.73 |
| OQU83904 | Sorghum | nucleus | 41.98 | 45.33 |
| TraesCS2A01G190400.1 | Wheat | plastid | 48.35 | 44.26 |
| Zm00001d019086_P001 | Maize | nucleus | 47.94 | 43.8 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 37.04 | 43.8 |
| CDY28918 | Canola | mitochondrion | 43.21 | 43.39 |
| Zm00001d021950_P007 | Maize | endoplasmic reticulum, nucleus | 47.94 | 43.07 |
| CDY12068 | Canola | nucleus | 30.66 | 41.62 |
| CDY23739 | Canola | nucleus | 32.51 | 41.25 |
| CDX79527 | Canola | nucleus | 33.95 | 40.64 |
| CDX90262 | Canola | nucleus | 31.69 | 40.31 |
| CDX84689 | Canola | nucleus | 33.74 | 40.2 |
| CDY67299 | Canola | nucleus | 31.48 | 40.16 |
| CDY17173 | Canola | nucleus | 30.86 | 39.79 |
| GSMUA_Achr3P02300_001 | Banana | nucleus | 54.53 | 39.03 |
| CDY37724 | Canola | nucleus | 25.1 | 37.77 |
| CDY25957 | Canola | nucleus | 42.39 | 37.25 |
| CDX75170 | Canola | extracellular | 12.35 | 36.81 |
| CDY43360 | Canola | nucleus | 26.54 | 35.64 |
| CDY24201 | Canola | nucleus | 26.34 | 35.36 |
| CDY26229 | Canola | nucleus | 25.31 | 33.15 |
| CDY48318 | Canola | nucleus | 25.31 | 33.06 |
| CDY42061 | Canola | cytosol, nucleus, plastid | 24.49 | 32.78 |
| CDY48851 | Canola | cytosol, nucleus, peroxisome | 24.49 | 32.69 |
| CDY45879 | Canola | cytosol, nucleus, plastid | 22.63 | 31.79 |
| CDY40554 | Canola | nucleus | 42.8 | 31.71 |
| CDY44555 | Canola | cytosol, nucleus, plastid | 23.66 | 31.68 |
| CDY51790 | Canola | cytosol | 6.38 | 28.97 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 6.58 | 28.57 |
| CDY42724 | Canola | cytosol | 20.99 | 26.91 |
| CDY69852 | Canola | cytosol | 20.99 | 26.7 |
| CDY42577 | Canola | nucleus | 29.84 | 26.61 |
| CDY36357 | Canola | nucleus | 29.63 | 26.57 |
| CDX69279 | Canola | nucleus | 11.32 | 23.31 |
| CDX73451 | Canola | cytosol | 11.93 | 23.2 |
| CDY31859 | Canola | nucleus | 11.11 | 22.41 |
| CDY69197 | Canola | nucleus | 10.29 | 22.22 |
| CDY02889 | Canola | nucleus | 9.88 | 22.12 |
| CDX78261 | Canola | nucleus | 11.73 | 22.01 |
| CDY31508 | Canola | nucleus | 11.11 | 21.6 |
| CDY04769 | Canola | nucleus | 10.49 | 21.52 |
| CDY01349 | Canola | nucleus | 10.49 | 21.16 |
| CDX73279 | Canola | cytosol | 10.49 | 21.07 |
| CDX96615 | Canola | nucleus | 10.7 | 20.63 |
| CDY33653 | Canola | nucleus | 10.7 | 20.55 |
| CDY25759 | Canola | nucleus | 10.49 | 20.48 |
| CDY29496 | Canola | nucleus | 10.91 | 20.31 |
| CDY64698 | Canola | nucleus | 10.91 | 20.31 |
| CDY55846 | Canola | nucleus | 16.67 | 20.2 |
| CDY25867 | Canola | nucleus | 16.46 | 19.75 |
| CDY26001 | Canola | nucleus | 16.26 | 19.41 |
| CDX79253 | Canola | nucleus | 11.11 | 19.29 |
| CDX88283 | Canola | nucleus | 11.11 | 19.29 |
| CDY24106 | Canola | nucleus | 16.26 | 19.13 |
| CDX88432 | Canola | nucleus | 10.91 | 18.66 |
| CDX87460 | Canola | nucleus | 10.91 | 18.6 |
| CDX68024 | Canola | nucleus | 10.7 | 18.37 |
| CDX76015 | Canola | nucleus | 11.32 | 18.03 |
| CDY21356 | Canola | nucleus | 10.7 | 17.93 |
| CDX69277 | Canola | mitochondrion | 6.79 | 17.74 |
| CDY46642 | Canola | nucleus | 10.49 | 17.65 |
| CDY41556 | Canola | nucleus | 10.49 | 17.59 |
| CDX80046 | Canola | nucleus | 11.32 | 17.41 |
| CDY27523 | Canola | nucleus | 11.52 | 17.34 |
| CDY06947 | Canola | nucleus | 15.23 | 17.21 |
| CDX87594 | Canola | nucleus | 11.32 | 17.19 |
| CDY48016 | Canola | nucleus | 11.52 | 17.18 |
| CDY41557 | Canola | nucleus | 11.11 | 17.09 |
| CDY57580 | Canola | nucleus | 15.43 | 16.93 |
| CDY27186 | Canola | nucleus | 15.64 | 16.93 |
| CDY67263 | Canola | nucleus | 11.32 | 16.77 |
| CDY13782 | Canola | nucleus | 10.49 | 16.61 |
| CDX76950 | Canola | nucleus | 10.49 | 16.56 |
| CDX72106 | Canola | nucleus | 15.43 | 16.48 |
| CDY21399 | Canola | mitochondrion | 4.53 | 15.17 |
| CDY15850 | Canola | nucleus | 11.52 | 15.14 |
| CDY00446 | Canola | nucleus | 10.49 | 15.0 |
| CDY08023 | Canola | nucleus | 11.11 | 15.0 |
| CDX74070 | Canola | cytosol | 10.7 | 14.44 |
| CDY05301 | Canola | nucleus | 9.47 | 13.11 |
| CDY13339 | Canola | mitochondrion | 4.53 | 13.1 |
| CDY24657 | Canola | nucleus | 9.05 | 12.94 |
| CDY47382 | Canola | golgi, plastid | 10.7 | 12.5 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:A0A078G9R8 | UniProt:A0A078G9R8 | EnsemblPlants:CDY22136 | ProteinID:CDY22136 |
| ProteinID:CDY22136.1 | InterPro:DAZAP1_RRM2 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| EnsemblPlantsGene:GSBRNA2T00018526001 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 |
| PANTHER:PTHR44291 | PANTHER:PTHR44291:SF2 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 |
| UniParc:UPI0002544756 | SEG:seg | : | : | : | : |
Description
BnaC01g39650DBnaC01g39650D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G9R8]
Coordinates
chrLK032128:+:70597..73967
Molecular Weight (calculated)
50261.6 Da
IEP (calculated)
8.871
GRAVY (calculated)
-0.505
Length
486 amino acids
Sequence
(BLAST)
(BLAST)
001: MQSDNGKLFI GGISWDTNEE RLKEYFSSFG EVIEAVILKD RTTGRARGFG FVVFADPAVA EIVITEKHSI DGRLVEAKKA VPRDDQNTVR SNSSSIQGSP
101: GGPGARTRKI FVGGLPSSVT ESDFKTYFEQ FGTPTDVVVM YDHNTQRPRG FGFITYDSEE AVEKVLLKTF HELNGKMVEV KRAVPKELSP SPARSPLGAG
201: YSYGVSRVNN LLNGYAQGFS PGAVGGYGLR MDGRFSPVGA GRTGFANFGS GYGMNVNFEQ GLPTGFTGGN SFNGNVDYGR GMSPYYIGNT NRFGPGGGYE
301: GGNGGGGGGN SSFFSSVTRN LWGNNGGLNS NSNTYMGGTT SGNNTLSGPF GNSWGAPGGG GGSNGVSNES MKFGYGGNGE SGFGLGTRNI GPSKAAPSSS
401: FSSASVANNT GYDGAGLAEF YGNGAVYSDP TWRSSAPETE GPGSFSYGIG GGGGGGGPSS DVSARSSSPG YVGSYKRQSN RGNLSS
101: GGPGARTRKI FVGGLPSSVT ESDFKTYFEQ FGTPTDVVVM YDHNTQRPRG FGFITYDSEE AVEKVLLKTF HELNGKMVEV KRAVPKELSP SPARSPLGAG
201: YSYGVSRVNN LLNGYAQGFS PGAVGGYGLR MDGRFSPVGA GRTGFANFGS GYGMNVNFEQ GLPTGFTGGN SFNGNVDYGR GMSPYYIGNT NRFGPGGGYE
301: GGNGGGGGGN SSFFSSVTRN LWGNNGGLNS NSNTYMGGTT SGNNTLSGPF GNSWGAPGGG GGSNGVSNES MKFGYGGNGE SGFGLGTRNI GPSKAAPSSS
401: FSSASVANNT GYDGAGLAEF YGNGAVYSDP TWRSSAPETE GPGSFSYGIG GGGGGGGPSS DVSARSSSPG YVGSYKRQSN RGNLSS
001: MQSDNGKLFI GGISWDTNEE RLKEYFSSFG EVIEAVILKD RTTGRARGFG FVVFADPAVA EIVITEKHNI DGRLVEAKKA VPRDDQNMVN RSNSSSIQGS
101: PGGPGRTRKI FVGGLPSSVT ESDFKTYFEQ FGTTTDVVVM YDHNTQRPRG FGFITYDSEE AVEKVLLKTF HELNGKMVEV KRAVPKELSP GPSRSPLGAG
201: YSYGVNRVNN LLNGYAQGFN PAAVGGYGLR MDGRFSPVGA GRSGFANYSS GYGMNVNFDQ GLPTGFTGGT NYNGNVDYGR GMSPYYIGNT NRFGPAVGYE
301: GGNGGGNSSF FSSVTRNLWG NNGGLNYNNN NTNSNSNTYM GGSSSGNNTL SGPFGNSGVN WGAPGGGNNA VSNENVKFGY GGNGESGFGL GTGGYAARNP
401: GANKAAPSSS FSSASATNNT GYDTAGLAEF YGNGAVYSDP TWRSPTPETE GPAPFSYGIG GGVPSSDVSA RSSSPGYVGS YSVNKRQPNR GIAT
101: PGGPGRTRKI FVGGLPSSVT ESDFKTYFEQ FGTTTDVVVM YDHNTQRPRG FGFITYDSEE AVEKVLLKTF HELNGKMVEV KRAVPKELSP GPSRSPLGAG
201: YSYGVNRVNN LLNGYAQGFN PAAVGGYGLR MDGRFSPVGA GRSGFANYSS GYGMNVNFDQ GLPTGFTGGT NYNGNVDYGR GMSPYYIGNT NRFGPAVGYE
301: GGNGGGNSSF FSSVTRNLWG NNGGLNYNNN NTNSNSNTYM GGSSSGNNTL SGPFGNSGVN WGAPGGGNNA VSNENVKFGY GGNGESGFGL GTGGYAARNP
401: GANKAAPSSS FSSASATNNT GYDTAGLAEF YGNGAVYSDP TWRSPTPETE GPAPFSYGIG GGVPSSDVSA RSSSPGYVGS YSVNKRQPNR GIAT
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JFN7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.