Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU0Hr1G008280.1 | Barley | nucleus | 99.57 | 99.57 |
| TraesCSU01G068500.1 | Wheat | nucleus | 99.35 | 99.35 |
| TraesCS4D01G152200.1 | Wheat | nucleus | 99.14 | 99.14 |
| Os11t0637700-01 | Rice | plasma membrane | 92.44 | 91.65 |
| GSMUA_Achr10P... | Banana | nucleus | 61.34 | 64.55 |
| VIT_12s0057g00480.t01 | Wine grape | nucleus | 65.23 | 63.18 |
| KRH74025 | Soybean | nucleus | 64.36 | 62.74 |
| KRH14098 | Soybean | nucleus | 64.79 | 62.63 |
| GSMUA_Achr10P... | Banana | nucleus | 61.99 | 62.39 |
| OQU83904 | Sorghum | nucleus | 59.61 | 61.33 |
| VIT_19s0090g01660.t01 | Wine grape | nucleus | 63.07 | 61.09 |
| KRH46297 | Soybean | nucleus | 63.07 | 60.96 |
| KRG98573 | Soybean | nucleus | 62.2 | 60.13 |
| Solyc04g014820.2.1 | Tomato | cytosol | 34.77 | 60.07 |
| PGSC0003DMT400037271 | Potato | nucleus | 60.69 | 59.79 |
| Solyc07g048030.2.1 | Tomato | nucleus | 56.37 | 59.73 |
| PGSC0003DMT400076643 | Potato | nucleus | 60.04 | 58.65 |
| GSMUA_Achr4P33100_001 | Banana | nucleus | 55.94 | 58.6 |
| GSMUA_Achr6P10970_001 | Banana | nucleus | 62.42 | 57.8 |
| Solyc10g006050.2.1 | Tomato | nucleus | 54.0 | 57.74 |
| KRH73860 | Soybean | nucleus | 58.96 | 57.23 |
| PGSC0003DMT400074192 | Potato | nucleus | 58.53 | 57.17 |
| KRH14284 | Soybean | nucleus | 58.1 | 56.28 |
| Solyc12g014600.1.1 | Tomato | nucleus | 52.92 | 56.06 |
| Solyc12g006180.1.1 | Tomato | nucleus | 52.48 | 55.48 |
| CDY07975 | Canola | nucleus | 56.16 | 55.2 |
| CDX74030 | Canola | nucleus | 55.94 | 54.87 |
| Bra001267.1-P | Field mustard | nucleus | 55.51 | 54.56 |
| PGSC0003DMT400034757 | Potato | nucleus | 55.08 | 54.49 |
| AT3G07810.2 | Thale cress | nucleus | 57.88 | 54.14 |
| Solyc11g012470.1.1 | Tomato | nucleus | 49.89 | 53.97 |
| Bra040031.1-P | Field mustard | nucleus | 56.37 | 53.7 |
| CDY22136 | Canola | nucleus | 56.37 | 53.7 |
| CDY66272 | Canola | nucleus | 56.16 | 53.17 |
| CDY35966 | Canola | nucleus | 56.59 | 53.04 |
| TraesCS2A01G190400.1 | Wheat | plastid | 60.04 | 52.35 |
| Bra029681.1-P | Field mustard | nucleus | 56.37 | 52.1 |
| PGSC0003DMT400060554 | Potato | nucleus | 52.7 | 51.91 |
| AT4G26650.1 | Thale cress | nucleus | 49.68 | 50.55 |
| Bra028973.1-P | Field mustard | nucleus | 46.65 | 49.88 |
| CDY11989 | Canola | nucleus | 46.22 | 49.54 |
| CDX94301 | Canola | nucleus | 46.65 | 48.87 |
| CDY36753 | Canola | nucleus | 45.79 | 48.74 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 43.63 | 48.67 |
| CDX92807 | Canola | nucleus | 47.3 | 48.67 |
| Bra024928.1-P | Field mustard | nucleus | 43.84 | 48.33 |
| Bra017475.1-P | Field mustard | nucleus | 44.28 | 48.01 |
| CDY41059 | Canola | nucleus | 44.28 | 48.01 |
| CDY46689 | Canola | nucleus | 47.95 | 47.95 |
| Bra019094.1-P | Field mustard | nucleus | 47.95 | 47.95 |
| CDY50131 | Canola | nucleus | 39.52 | 47.91 |
| CDY46690 | Canola | nucleus | 44.28 | 47.9 |
| CDX77783 | Canola | nucleus | 43.41 | 47.29 |
| Bra021062.1-P | Field mustard | nucleus | 39.96 | 47.19 |
| CDX89316 | Canola | endoplasmic reticulum | 45.36 | 46.98 |
| AT5G47620.4 | Thale cress | cytoskeleton, cytosol, nucleus | 45.57 | 46.58 |
| Bra026413.1-P | Field mustard | nucleus | 42.55 | 46.57 |
| Bra022145.1-P | Field mustard | nucleus | 45.36 | 45.65 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 39.96 | 45.01 |
| AT5G55550.10 | Thale cress | nucleus | 48.16 | 43.98 |
| CDY28918 | Canola | mitochondrion | 45.14 | 43.18 |
| GSMUA_Achr3P02300_001 | Banana | nucleus | 61.56 | 41.97 |
| TraesCS1A01G150600.1 | Wheat | nucleus | 38.88 | 39.65 |
| CDX75170 | Canola | extracellular | 13.61 | 38.65 |
| CDY25957 | Canola | nucleus | 44.71 | 37.43 |
| TraesCS6A01G291100.1 | Wheat | nucleus | 26.78 | 36.36 |
| CDY40554 | Canola | nucleus | 44.92 | 31.71 |
| TraesCS7A01G282600.1 | Wheat | cytosol | 23.54 | 31.14 |
| TraesCS7A01G360900.1 | Wheat | nucleus | 26.57 | 30.67 |
| TraesCS6A01G187000.1 | Wheat | nucleus | 26.57 | 29.78 |
| TraesCS2A01G267500.1 | Wheat | nucleus | 22.25 | 27.69 |
| TraesCS5A01G405300.1 | Wheat | nucleus | 20.52 | 26.46 |
| TraesCS1A01G234200.1 | Wheat | cytosol | 20.09 | 25.48 |
| TraesCS3A01G485000.1 | Wheat | cytosol | 19.65 | 24.4 |
| TraesCS7A01G398200.1 | Wheat | cytosol, mitochondrion, nucleus | 12.96 | 21.2 |
| TraesCS4A01G068100.1 | Wheat | nucleus | 11.23 | 20.88 |
| TraesCS3A01G389600.1 | Wheat | nucleus | 12.96 | 20.2 |
| TraesCS6A01G278300.3 | Wheat | plastid | 12.31 | 19.52 |
| TraesCS3A01G220400.1 | Wheat | nucleus | 18.36 | 19.32 |
| TraesCS3A01G499100.1 | Wheat | cytosol, nucleus, plastid | 12.53 | 18.59 |
| TraesCS3A01G181900.1 | Wheat | nucleus | 17.93 | 17.29 |
| TraesCS4A01G106800.2 | Wheat | cytosol, mitochondrion, nucleus | 11.23 | 17.28 |
| TraesCS7A01G178700.2 | Wheat | nucleus | 10.8 | 16.45 |
| TraesCS2A01G526400.1 | Wheat | nucleus | 14.9 | 13.56 |
| TraesCS6A01G318100.1 | Wheat | nucleus | 11.02 | 10.47 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G150600.1 | EnsemblPlantsGene:TraesCS4A01G150600 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:DAZAP1_RRM2 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | PANTHER:PTHR44291 | PANTHER:PTHR44291:SF2 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg |
| SMART:SM00360 | SUPFAM:SSF54928 | TIGR:cd12325 | TIGR:cd12327 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr4A:-:296904161..296905688
Molecular Weight (calculated)
48766.1 Da
IEP (calculated)
8.475
GRAVY (calculated)
-0.519
Length
463 amino acids
Sequence
(BLAST)
(BLAST)
001: MEADAGKLFI GGISWDTNED RLREYFEKYG EVVEAVIMRD RATGRARGFG FIVFADPAVA ERVIMEKHMI DGRMVEAKKA VPRDDQQALS KSGGSAHGSP
101: GPSRTKKIFV GGLASTVTEA DFRTYFEQFG TITDVVVMYD HNTQRPRGFG FITYDSEDAV DKALFKTFHE LNGKMVEVKR AVPKELSPGP SMRSPAGGIN
201: YVMNRANSFL NGYTQGYSPS PVGGYGMRMD ARFGLLSGGR SSYPSFGGGY GIGMNFDPGM NPGIGGSSNF NNSVQYGRQI NPYYSGNSGR YNSNISYGGV
301: NDNSGSVFNS LARNLWGNSG LNYSSNSANS NSFMSSANGG LGGIGNNNVN WGTPPVPAQG ANAGSGYGSG NFGYGSTENN FNLSPGAYGR NTGSGGVNAS
401: LNQSSNGYGR NFGDSSAGGG GSIYGDTTWR SGSELDGTSP FGYGLGNAAS DVTAKSSAGY MGH
101: GPSRTKKIFV GGLASTVTEA DFRTYFEQFG TITDVVVMYD HNTQRPRGFG FITYDSEDAV DKALFKTFHE LNGKMVEVKR AVPKELSPGP SMRSPAGGIN
201: YVMNRANSFL NGYTQGYSPS PVGGYGMRMD ARFGLLSGGR SSYPSFGGGY GIGMNFDPGM NPGIGGSSNF NNSVQYGRQI NPYYSGNSGR YNSNISYGGV
301: NDNSGSVFNS LARNLWGNSG LNYSSNSANS NSFMSSANGG LGGIGNNNVN WGTPPVPAQG ANAGSGYGSG NFGYGSTENN FNLSPGAYGR NTGSGGVNAS
401: LNQSSNGYGR NFGDSSAGGG GSIYGDTTWR SGSELDGTSP FGYGLGNAAS DVTAKSSAGY MGH
001: MQSDNGKLFI GGISWDTNEE RLKEYFSSFG EVIEAVILKD RTTGRARGFG FVVFADPAVA EIVITEKHNI DGRLVEAKKA VPRDDQNMVN RSNSSSIQGS
101: PGGPGRTRKI FVGGLPSSVT ESDFKTYFEQ FGTTTDVVVM YDHNTQRPRG FGFITYDSEE AVEKVLLKTF HELNGKMVEV KRAVPKELSP GPSRSPLGAG
201: YSYGVNRVNN LLNGYAQGFN PAAVGGYGLR MDGRFSPVGA GRSGFANYSS GYGMNVNFDQ GLPTGFTGGT NYNGNVDYGR GMSPYYIGNT NRFGPAVGYE
301: GGNGGGNSSF FSSVTRNLWG NNGGLNYNNN NTNSNSNTYM GGSSSGNNTL SGPFGNSGVN WGAPGGGNNA VSNENVKFGY GGNGESGFGL GTGGYAARNP
401: GANKAAPSSS FSSASATNNT GYDTAGLAEF YGNGAVYSDP TWRSPTPETE GPAPFSYGIG GGVPSSDVSA RSSSPGYVGS YSVNKRQPNR GIAT
101: PGGPGRTRKI FVGGLPSSVT ESDFKTYFEQ FGTTTDVVVM YDHNTQRPRG FGFITYDSEE AVEKVLLKTF HELNGKMVEV KRAVPKELSP GPSRSPLGAG
201: YSYGVNRVNN LLNGYAQGFN PAAVGGYGLR MDGRFSPVGA GRSGFANYSS GYGMNVNFDQ GLPTGFTGGT NYNGNVDYGR GMSPYYIGNT NRFGPAVGYE
301: GGNGGGNSSF FSSVTRNLWG NNGGLNYNNN NTNSNSNTYM GGSSSGNNTL SGPFGNSGVN WGAPGGGNNA VSNENVKFGY GGNGESGFGL GTGGYAARNP
401: GANKAAPSSS FSSASATNNT GYDTAGLAEF YGNGAVYSDP TWRSPTPETE GPAPFSYGIG GGVPSSDVSA RSSSPGYVGS YSVNKRQPNR GIAT
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JFN7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.