Factsheet for Bra029681.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35966	Canola	nucleus	96.41	97.77
CDY66272	Canola	nucleus	95.21	97.55
Bra040031.1-P	Field mustard	nucleus	87.62	90.33
AT3G07810.2	Thale cress	nucleus	88.82	89.9
Bra001267.1-P	Field mustard	nucleus	82.83	88.11
GSMUA_Achr10P...	Banana	nucleus	54.29	59.13
GSMUA_Achr10P...	Banana	nucleus	51.7	58.86
TraesCS4D01G152200.1	Wheat	nucleus	52.1	56.37
TraesCS4A01G150600.1	Wheat	nucleus	52.1	56.37
HORVU0Hr1G008280.1	Barley	nucleus	52.1	56.37
Os11t0637700-01	Rice	plasma membrane	52.49	56.32
TraesCSU01G068500.1	Wheat	nucleus	51.7	55.94
GSMUA_Achr6P10970_001	Banana	nucleus	54.89	55.0
GSMUA_Achr4P33100_001	Banana	nucleus	47.9	54.3
Zm00001d007772_P001	Maize	nucleus	47.9	53.45
Zm00001d019079_P001	Maize	cytosol	47.11	52.68
EER98147	Sorghum	nucleus	47.31	52.32
EER96020	Sorghum	nucleus	47.11	51.87
Os07t0584500-01	Rice	nucleus	48.7	51.69
Zm00001d019084_P002	Maize	nucleus	46.51	51.32
EER97452	Sorghum	nucleus	47.9	50.96
TraesCS2B01G216600.2	Wheat	cytosol	47.7	50.74
TraesCS2D01G197500.2	Wheat	nucleus	47.51	50.64
Bra024928.1-P	Field mustard	nucleus	41.92	50.0
Bra028973.1-P	Field mustard	nucleus	42.71	49.42
Bra026413.1-P	Field mustard	nucleus	41.72	49.41
Zm00001d006704_P002	Maize	nucleus	47.31	48.97
Bra017475.1-P	Field mustard	nucleus	41.12	48.24
Bra019094.1-P	Field mustard	nucleus	44.51	48.16
Bra021062.1-P	Field mustard	nucleus	36.33	46.43
OQU83904	Sorghum	nucleus	40.92	45.56
Bra022145.1-P	Field mustard	nucleus	41.12	44.78
Zm00001d019086_P001	Maize	nucleus	47.51	44.74
TraesCS2A01G190400.1	Wheat	plastid	47.31	44.63
Zm00001d021950_P007	Maize	endoplasmic reticulum, nucleus	47.31	43.81
Bra035441.1-P	Field mustard	mitochondrion, nucleus, plastid	6.79	43.59
Bra021850.1-P	Field mustard	nucleus	30.34	41.42
Bra005496.1-P	Field mustard	nucleus	30.94	41.22
Bra010757.1-P	Field mustard	nucleus	30.74	40.31
Bra022938.1-P	Field mustard	nucleus	32.53	39.95
GSMUA_Achr3P02300_001	Banana	nucleus	53.29	39.32
Bra039380.1-P	Field mustard	nucleus	26.15	36.19
Bra027860.1-P	Field mustard	cytosol, nucleus, peroxisome	23.75	32.69
Bra025568.1-P	Field mustard	nucleus	28.54	26.24
Bra017802.1-P	Field mustard	nucleus	19.56	24.02
Bra007096.1-P	Field mustard	nucleus	11.18	21.62
Bra012350.1-P	Field mustard	nucleus	10.38	20.88
Bra038113.1-P	Field mustard	nucleus	16.97	20.53
Bra024547.1-P	Field mustard	nucleus	9.78	20.5
Bra012254.1-P	Field mustard	nucleus	9.78	20.33
Bra025852.1-P	Field mustard	nucleus	10.58	20.31
Bra016445.1-P	Field mustard	nucleus	10.38	20.16
Bra039664.1-P	Field mustard	nucleus	16.17	19.52
Bra003651.1-P	Field mustard	nucleus	9.98	18.45
Bra004508.1-P	Field mustard	nucleus	11.38	18.27
Bra040485.1-P	Field mustard	nucleus	11.58	17.79
Bra014667.1-P	Field mustard	nucleus	10.58	17.38
Bra031385.1-P	Field mustard	nucleus	9.98	17.24
Bra012321.1-P	Field mustard	nucleus	9.78	16.95
Bra016954.1-P	Field mustard	nucleus	14.77	16.82
Bra010203.1-P	Field mustard	nucleus	10.18	16.72
Bra031230.1-P	Field mustard	nucleus	10.18	16.61
Bra007277.1-P	Field mustard	nucleus	14.57	16.26
Bra029612.1-P	Field mustard	nucleus	8.78	15.33
Bra001228.1-P	Field mustard	cytosol	10.98	15.19
Bra030265.1-P	Field mustard	nucleus	10.98	15.03
Bra015741.1-P	Field mustard	nucleus, plastid, vacuole	8.78	14.1

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	EnsemblPlantsGene:Bra029681	EnsemblPlants:Bra029681.1	EnsemblPlants:Bra029681.1-P	InterPro:DAZAP1_RRM2
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677
UniProt:M4ELL3	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44291	PANTHER:PTHR44291:SF2
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002547DF6	SEG:seg

Description

AT3G07810 (E=4e-179) | heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative

Coordinates

chrA05:-:22682091..22683760

Molecular Weight (calculated)

52110.7 Da

IEP (calculated)

9.070

GRAVY (calculated)

-0.563

Length

501 amino acids

Sequence
(BLAST)

001: MQSDNGKLFI GGISWDTNEE RLKEYFSTFG EVIEAVILKD RTTGRARGFG FVVFADPAVA EFVITEKHHI DGRLVEAKKA VPRDDQNMVT RSNSSSIQGS
101: PGPGARTRKI FVGGLPSSVT ESDFKTYFEQ FGTTTDVVVM YDHNTQRPRG FGFITYDTEE AVDKVLLKTF HELNGKMVEV KRAVPKEMSP GPARSPLGAA
201: GYSYGVNRVN NLLNGYAQGF NPGAVGGYGL RMDGRFSPVG AGRSGFANFG SGYGMNMNFD QGLPTGFTGG NGNLEYGRGM SPYYIGNANR FGPGPAVGYE
301: GSNGGGGGGN SSFFSSVTRN LWGNNGGLNY NNNNNNAANS NSNSNTYMGG GGSSSGNNNT LSGGPFGNWG APGGGGGGNN AVGNENAKFG YGGNGDSGFG
401: YAARSIGPSK AAAPSSSFSS ANNTGYDGAG LAEFYGNGAV YSDPTWRSPT PPETEGPASF SYGIGGGGGG PSSDVSARSS SPGYVGSYKR QPNRGNFALT
501: R

Best Arabidopsis Sequence Match ( AT3G07810.1 )
(BLAST)

001: MQSDNGKLFI GGISWDTNEE RLKEYFSSFG EVIEAVILKD RTTGRARGFG FVVFADPAVA EIVITEKHNI DGRLVEAKKA VPRDDQNMVN RSNSSSIQGS
101: PGGPGRTRKI FVGGLPSSVT ESDFKTYFEQ FGTTTDVVVM YDHNTQRPRG FGFITYDSEE AVEKVLLKTF HELNGKMVEV KRAVPKELSP GPSRSPLGAG
201: YSYGVNRVNN LLNGYAQGFN PAAVGGYGLR MDGRFSPVGA GRSGFANYSS GYGMNVNFDQ GLPTGFTGGT NYNGNVDYGR GMSPYYIGNT NRFGPAVGYE
301: GGNGGGNSSF FSSVTRNLWG NNGGLNYNNN NTNSNSNTYM GGSSSGNNTL SGPFGNSGVN WGAPGGGNNA VSNENVKFGY GGNGESGFGL GTGGYAARNP
401: GANKAAPSSS FSSASATNNT GYDTAGLAEF YGNGAVYSDP TWRSPTPETE GPAPFSYGIG GGVPSSDVSA RSSSPGYVGS YSVNKRQPNR GIAT

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JFN7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.