Factsheet for Bra003651.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 3
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68024	Canola	nucleus	94.46	90.46
AT1G78260.1	Thale cress	nucleus	82.29	77.7
Bra031385.1-P	Field mustard	nucleus	68.63	64.14
Bra012321.1-P	Field mustard	nucleus	65.31	61.25
VIT_18s0001g05840.t01	Wine grape	nucleus	53.87	52.9
KRH16743	Soybean	nucleus	53.14	52.55
KRH18921	Soybean	nucleus	53.51	52.54
Solyc04g074310.2.1	Tomato	nucleus	52.77	48.81
KRH62327	Soybean	nucleus	49.45	46.69
KRH53044	Soybean	nucleus	48.71	45.99
Bra012254.1-P	Field mustard	nucleus	32.84	36.93
Bra016445.1-P	Field mustard	nucleus	33.58	35.27
Bra025852.1-P	Field mustard	nucleus	33.95	35.25
Bra035441.1-P	Field mustard	mitochondrion, nucleus, plastid	9.59	33.33
Bra007096.1-P	Field mustard	nucleus	30.63	32.05
Bra024547.1-P	Field mustard	nucleus	27.68	31.38
Bra004508.1-P	Field mustard	nucleus	35.06	30.45
Bra040485.1-P	Field mustard	nucleus	36.53	30.37
Bra012350.1-P	Field mustard	nucleus	27.68	30.12
Bra010203.1-P	Field mustard	nucleus	30.63	27.21
Bra015741.1-P	Field mustard	nucleus, plastid, vacuole	28.41	24.68
Bra029612.1-P	Field mustard	nucleus	16.97	16.03
Bra031230.1-P	Field mustard	nucleus	17.34	15.31
Bra039664.1-P	Field mustard	nucleus	22.14	14.46
Bra038113.1-P	Field mustard	nucleus	21.4	14.01
Bra001228.1-P	Field mustard	cytosol	17.34	12.98
Bra005496.1-P	Field mustard	nucleus	17.34	12.5
Bra024928.1-P	Field mustard	nucleus	18.45	11.9
Bra016954.1-P	Field mustard	nucleus	19.19	11.82
Bra007277.1-P	Field mustard	nucleus	19.19	11.58
Bra014667.1-P	Field mustard	nucleus	12.92	11.48
Bra021850.1-P	Field mustard	nucleus	15.5	11.44
Bra039380.1-P	Field mustard	nucleus	15.13	11.33
Bra001267.1-P	Field mustard	nucleus	19.56	11.25
Bra017475.1-P	Field mustard	nucleus	17.71	11.24
Bra021062.1-P	Field mustard	nucleus	16.24	11.22
Bra022938.1-P	Field mustard	nucleus	16.61	11.03
Bra022145.1-P	Field mustard	nucleus	18.45	10.87
Bra040031.1-P	Field mustard	nucleus	18.82	10.49
Bra010757.1-P	Field mustard	nucleus	14.76	10.47
Bra017802.1-P	Field mustard	nucleus	15.13	10.05
Bra029681.1-P	Field mustard	nucleus	18.45	9.98
Bra027860.1-P	Field mustard	cytosol, nucleus, peroxisome	13.28	9.89
Bra030265.1-P	Field mustard	nucleus	12.92	9.56
Bra028973.1-P	Field mustard	nucleus	15.13	9.47
Bra026413.1-P	Field mustard	nucleus	14.02	8.98
Bra025568.1-P	Field mustard	nucleus	17.71	8.81
Bra019094.1-P	Field mustard	nucleus	14.02	8.21

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	EnsemblPlantsGene:Bra003651	EnsemblPlants:Bra003651.1	EnsemblPlants:Bra003651.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677
UniProt:M4CHG8	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44828	PANTHER:PTHR44828:SF3
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000254145D	SEG:seg

Description

AT1G78260 (E=2e-073) | RNA recognition motif (RRM)-containing protein

Coordinates

chrA07:-:14236178..14238322

Molecular Weight (calculated)

30162.0 Da

IEP (calculated)

9.115

GRAVY (calculated)

-0.631

Length

271 amino acids

Sequence
(BLAST)

001: MYQTSYYRSP FGDTTFTKVF VGGLAWETPA AEMRRYFDQF GEILEAVIIT DKNTGKSKGY GFVTFQEADS ATRAVAAPNP VIDGRKANCN IASFGRPRPS
101: PPRGRGQTGS PSPYQSGGPS AYTGMAAPLP PASAAHQLMY PSYGYTYNPD QFRYHQAMYN TQLQQAQYYQ QQQQLYGGGA TSPSAATIMP SPYYYGYSLQ
201: ASRVPYQHHH PHLPQPYNPQ QQQQHQRFTS PPLLVYPSSS PFSSPLQGLL SSSEGAYLVS FNYFTCYQSY I

Best Arabidopsis Sequence Match ( AT1G78260.2 )
(BLAST)

001: MSQTSYYRSP FGDTTYTKVF VGGLAWETPT DEMRRYFEQF GEILEAVIIT DKNTGKSKGY GFVTFRESDS ATRAVADPNP VIDGRKANCN IASFGRPRPS
101: PPRGRGQTGS PSQYQSGGPS TYTGMAAPLP PAAAPQLMYP SYGYTYNPDQ FGYHQALYNT QLQQAQYYQQ QQQLYGGGAT SPSSSGATIM PSPYYYGYSL
201: QAPRVPYQHH HHLPQPYNPQ QHHHQRFSSP SFLVYPSNSS FAPPLQGVLS SSTGTYLINS FFFFIFLWIY F

Arabidopsis Description

At1g78260 [Source:UniProtKB/TrEMBL;Acc:Q8LF90]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.