Factsheet for Bra026413.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89316	Canola	endoplasmic reticulum	90.31	85.46
Bra019094.1-P	Field mustard	nucleus	84.16	76.89
AT4G26650.1	Thale cress	nucleus	82.27	76.48
Bra028973.1-P	Field mustard	nucleus	67.14	65.59
VIT_19s0090g01660.t01	Wine grape	nucleus	55.32	48.95
KRH14284	Soybean	nucleus	55.08	48.74
KRH73860	Soybean	nucleus	54.37	48.22
KRG98573	Soybean	nucleus	54.37	48.02
KRH46297	Soybean	nucleus	54.14	47.81
PGSC0003DMT400037271	Potato	nucleus	52.25	47.02
PGSC0003DMT400076643	Potato	nucleus	52.25	46.62
GSMUA_Achr10P...	Banana	nucleus	47.75	45.91
GSMUA_Achr10P...	Banana	nucleus	49.41	45.43
Solyc10g006050.2.1	Tomato	nucleus	45.86	44.8
Solyc12g014600.1.1	Tomato	nucleus	45.86	44.39
Bra001267.1-P	Field mustard	nucleus	49.17	44.16
Os11t0637700-01	Rice	plasma membrane	47.75	43.25
GSMUA_Achr6P10970_001	Banana	nucleus	50.83	43.0
Bra040031.1-P	Field mustard	nucleus	49.17	42.8
TraesCS4A01G150600.1	Wheat	nucleus	46.57	42.55
TraesCS4D01G152200.1	Wheat	nucleus	46.57	42.55
HORVU0Hr1G008280.1	Barley	nucleus	46.57	42.55
GSMUA_Achr4P33100_001	Banana	nucleus	44.44	42.53
TraesCSU01G068500.1	Wheat	nucleus	46.34	42.33
Zm00001d019079_P001	Maize	cytosol	44.68	42.19
Zm00001d007772_P001	Maize	nucleus	44.44	41.87
Bra029681.1-P	Field mustard	nucleus	49.41	41.72
EER97452	Sorghum	nucleus	46.1	41.4
EER98147	Sorghum	nucleus	44.21	41.28
Os07t0584500-01	Rice	nucleus	45.86	41.1
EER96020	Sorghum	nucleus	44.21	41.1
Zm00001d019084_P002	Maize	nucleus	43.97	40.97
TraesCS2D01G197500.2	Wheat	nucleus	45.15	40.64
TraesCS2B01G216600.2	Wheat	cytosol	45.15	40.55
Bra017475.1-P	Field mustard	nucleus	40.66	40.28
Zm00001d006704_P002	Maize	nucleus	45.63	39.88
Bra021062.1-P	Field mustard	nucleus	36.41	39.29
Bra024928.1-P	Field mustard	nucleus	38.06	38.33
Bra022145.1-P	Field mustard	nucleus	39.48	36.3
Bra021850.1-P	Field mustard	nucleus	31.44	36.24
Bra005496.1-P	Field mustard	nucleus	31.91	35.9
TraesCS2A01G190400.1	Wheat	plastid	44.92	35.78
Zm00001d019086_P001	Maize	nucleus	44.68	35.53
Zm00001d021950_P007	Maize	endoplasmic reticulum, nucleus	45.15	35.3
OQU83904	Sorghum	nucleus	36.88	34.67
Bra035441.1-P	Field mustard	mitochondrion, nucleus, plastid	6.38	34.62
Bra022938.1-P	Field mustard	nucleus	32.62	33.82
Bra010757.1-P	Field mustard	nucleus	28.84	31.94
GSMUA_Achr3P02300_001	Banana	nucleus	51.06	31.81
Bra039380.1-P	Field mustard	nucleus	24.35	28.45
Bra027860.1-P	Field mustard	cytosol, nucleus, peroxisome	22.22	25.82
Bra017802.1-P	Field mustard	nucleus	19.39	20.1
Bra025568.1-P	Field mustard	nucleus	25.53	19.82
Bra024547.1-P	Field mustard	nucleus	9.69	17.15
Bra007096.1-P	Field mustard	nucleus	10.17	16.6
Bra025852.1-P	Field mustard	nucleus	10.17	16.48
Bra012254.1-P	Field mustard	nucleus	9.22	16.18
Bra016445.1-P	Field mustard	nucleus	9.69	15.89
Bra038113.1-P	Field mustard	nucleus	15.37	15.7
Bra039664.1-P	Field mustard	nucleus	15.37	15.66
Bra012350.1-P	Field mustard	nucleus	9.22	15.66
Bra031230.1-P	Field mustard	nucleus	10.87	14.98
Bra004508.1-P	Field mustard	nucleus	10.87	14.74
Bra010203.1-P	Field mustard	nucleus	10.17	14.1
Bra007277.1-P	Field mustard	nucleus	14.89	14.03
Bra003651.1-P	Field mustard	nucleus	8.98	14.02
Bra040485.1-P	Field mustard	nucleus	10.64	13.8
Bra014667.1-P	Field mustard	nucleus	9.69	13.44
Bra016954.1-P	Field mustard	nucleus	13.95	13.41
Bra031385.1-P	Field mustard	nucleus	8.98	13.1
Bra029612.1-P	Field mustard	nucleus	8.75	12.89
Bra012321.1-P	Field mustard	nucleus	8.75	12.8
Bra001228.1-P	Field mustard	cytosol	9.93	11.6
Bra030265.1-P	Field mustard	nucleus	9.22	10.66
Bra015741.1-P	Field mustard	nucleus, plastid, vacuole	7.57	10.26

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	EnsemblPlantsGene:Bra026413	EnsemblPlants:Bra026413.1	EnsemblPlants:Bra026413.1-P	InterPro:DAZAP1_RRM2
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677
UniProt:M4ECA4	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44291	PANTHER:PTHR44291:SF1
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002545566	SEG:seg

Description

AT4G26650 (E=6e-185) | RNA recognition motif (RRM)-containing protein

Coordinates

chrA01:+:9449537..9450933

Molecular Weight (calculated)

46080.4 Da

IEP (calculated)

9.244

GRAVY (calculated)

-0.521

Length

423 amino acids

Sequence
(BLAST)

001: MESVSNLGKL FIGGISWDTD EERLGEYFSK FGDLVESVIM RDRTTGRARG FGFIVFADPS VAERVIMEKH IIDGRTQVLK RHASPMHLIS SPNHGGNGGR
101: TKKIFVGGLP SSITEAEFKN YFDQFGKVSD VVVMYDHNTQ RPRGFGFITF DSEESVDIVL HKTFHELNGK MVEVKRAVPK EPSQASINRS SPVLGFGNNY
201: GVVSNNSYFN SFAPGYISNN PGGRFSPIGS GRNAFSNFGL GLNQELSLNG NTLGFNRVPG DQYFNNASPN RFNRGDSAYN PSNRDLWGNS PGLNLGVSVG
301: NNRGNWGLSD TNGYGRSVGT GSGLSALSFS GNNNNTNGFD SSIGELYRGS SVYSDSTWQQ MLPHQSSNEL EGLSRSYGFG IGNVGSDPSA NASEGYPRSY
401: SVGGNRQTNR RMHLKGFSVV YLF

Best Arabidopsis Sequence Match ( AT4G26650.2 )
(BLAST)

001: MEQKMESASD LGKLFIGGIS WDTDEERLQE YFGKYGDLVE AVIMRDRTTG RARGFGFIVF ADPSVAERVI MDKHIIDGRT VEAKKAVPRD DQQVLKRHAS
101: PMHLISPSHG GNGGGARTKK IFVGGLPSSI TEAEFKNYFD QFGTIADVVV MYDHNTQRPR GFGFITFDSE ESVDMVLHKT FHELNGKMVE VKRAVPKELS
201: STTPNRSPLI GYGNNYGVVP NRSSANSYFN SFPPGYNNNN LGSAGRFSPI GSGRNAFSSF GLGLNQELNL NSNFDGNTLG YSRIPGNQYF NSASPNRYNS
301: PIGYNRGDSA YNPSNRDLWG NRSDSSGPGW NLGVSVGNNR GNWGLSSVVS DNNGYGRSYG AGSGLSGLSF AGNTNGFDGS IGELYRGSSV YSDSTWQQSM
401: PHHQSSNELD GLSRSYGFGI DNVGSDPSAN ASEGYSGNYN VGNRQTHRGI EA

Arabidopsis Description

AT4g26650/T15N24_100 [Source:UniProtKB/TrEMBL;Acc:Q8W569]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.