Factsheet for Bra017802.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42724	Canola	cytosol	91.42	98.42
CDY69852	Canola	cytosol	91.42	97.64
AT4G36960.2	Thale cress	cytosol	84.8	91.29
VIT_07s0031g00600.t01	Wine grape	cytosol	64.95	73.82
KRH77004	Soybean	nucleus	65.2	73.48
KRH28467	Soybean	cytosol	64.46	72.05
GSMUA_Achr4P24260_001	Banana	cytosol	56.86	70.52
PGSC0003DMT400010280	Potato	cytosol	63.48	69.81
Solyc02g090910.2.1	Tomato	nucleus	63.48	68.88
GSMUA_Achr2P14710_001	Banana	cytosol	59.31	67.41
Zm00001d011885_P008	Maize	cytosol	58.58	66.39
Os01t0945800-01	Rice	nucleus	58.58	65.84
KXG34100	Sorghum	cytosol	58.09	65.83
Os05t0376000-00	Rice	cytosol	33.09	64.59
HORVU1Hr1G057660.1	Barley	cytosol	55.64	62.36
TraesCS1D01G237800.3	Wheat	cytosol	55.39	62.09
TraesCS1B01G249300.1	Wheat	cytosol	55.39	61.92
TraesCS1A01G234200.1	Wheat	cytosol	54.9	61.37
TraesCS3B01G532600.3	Wheat	cytosol	49.26	53.89
TraesCS3D01G480300.1	Wheat	cytosol	49.02	53.62
TraesCS3A01G485000.1	Wheat	cytosol	49.02	53.62
HORVU3Hr1G105930.10	Barley	cytoskeleton, cytosol, nucleus	48.53	53.37
Zm00001d042133_P003	Maize	cytosol	48.28	49.5
CDX69279	Canola	nucleus	26.47	45.76
Bra035441.1-P	Field mustard	mitochondrion, nucleus, plastid	5.88	30.77
Bra021850.1-P	Field mustard	nucleus	22.79	25.34
Bra005496.1-P	Field mustard	nucleus	23.04	25.0
Bra010757.1-P	Field mustard	nucleus	22.06	23.56
Bra022938.1-P	Field mustard	nucleus	23.53	23.53
Bra039380.1-P	Field mustard	nucleus	19.61	22.1
Bra024928.1-P	Field mustard	nucleus	22.06	21.43
Bra017475.1-P	Field mustard	nucleus	22.3	21.31
Bra001267.1-P	Field mustard	nucleus	24.26	21.02
Bra040031.1-P	Field mustard	nucleus	24.51	20.58
Bra027860.1-P	Field mustard	cytosol, nucleus, peroxisome	17.65	19.78
Bra019094.1-P	Field mustard	nucleus	22.3	19.65
Bra021062.1-P	Field mustard	nucleus	18.87	19.64
Bra029681.1-P	Field mustard	nucleus	24.02	19.56
Bra026413.1-P	Field mustard	nucleus	20.1	19.39
Bra022145.1-P	Field mustard	nucleus	21.81	19.35
Bra028973.1-P	Field mustard	nucleus	20.1	18.94
Bra025852.1-P	Field mustard	nucleus	11.52	18.01
Bra024547.1-P	Field mustard	nucleus	10.29	17.57
Bra012350.1-P	Field mustard	nucleus	10.54	17.27
Bra016445.1-P	Field mustard	nucleus	10.78	17.05
Bra012254.1-P	Field mustard	nucleus	10.05	17.01
Bra038113.1-P	Field mustard	nucleus	16.91	16.67
Bra039664.1-P	Field mustard	nucleus	16.42	16.14
Bra010203.1-P	Field mustard	nucleus	11.76	15.74
Bra025568.1-P	Field mustard	nucleus	20.83	15.6
Bra003651.1-P	Field mustard	nucleus	10.05	15.13
Bra004508.1-P	Field mustard	nucleus	11.52	15.06
Bra007096.1-P	Field mustard	nucleus	9.07	14.29
Bra031230.1-P	Field mustard	nucleus	10.54	14.01
Bra007277.1-P	Field mustard	nucleus	15.2	13.81
Bra040485.1-P	Field mustard	nucleus	11.03	13.8
Bra031385.1-P	Field mustard	nucleus	9.8	13.79
Bra012321.1-P	Field mustard	nucleus	9.56	13.49
Bra016954.1-P	Field mustard	nucleus	14.46	13.41
Bra014667.1-P	Field mustard	nucleus	9.8	13.11
Bra029612.1-P	Field mustard	nucleus	8.82	12.54
Bra015741.1-P	Field mustard	nucleus, plastid, vacuole	9.56	12.5
Bra001228.1-P	Field mustard	cytosol	10.54	11.88
Bra030265.1-P	Field mustard	nucleus	9.8	10.93

Protein Annotations

EnsemblPlants:Bra017802.1	EnsemblPlants:Bra017802.1-P	EnsemblPlantsGene:Bra017802	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf
InterPro:RBD_domain_sf	InterPro:RRM_dom	PANTHER:PTHR45519	PFAM:PF00076	PFscan:PS50102	SEG:seg
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002540CD4	UniProt:M4DMR7	MapMan:35.1	:

Description

AT4G36960 (E=6e-171) | RNA recognition motif (RRM)-containing protein

Coordinates

chrA03:-:30562033..30567149

Molecular Weight (calculated)

44767.5 Da

IEP (calculated)

6.199

GRAVY (calculated)

-0.563

Length

408 amino acids

Sequence
(BLAST)

001: MNDLMTNSFM SYIDLRKAAM KDMEAGPDSD LEMVLGIPWE IDSDGLRDYM SKFGDLEDCI VMKDRSTGRS RGFGYVTFAS SQDAKEALKG EHFLGNRILE
101: VKVATPKEEM RQPAKKVTRI FVARIPPSVS ESDFRRHFEK YGEITDLYMP KDHNSKQHRG IGFITFATSD SVEDLMEDTH DLGGTTVAVD RATPKEDDPP
201: PRPPPAARMQ RPPVAVAGGF GAPGGYGAYD AYISAATRYA ALGAPTLYDN AASFYGRAEP TRGIGNKIFV GRLPQEASVD DLRDYFGRFG RIQDAYIPKD
301: PKRSGHRGFG FVTFAENGVA DRVARRSHEI CGQEVAIDSA TPLDEAGPSA GGSSTLTSSS RPEYFGGYGG GPVRAFGRMY GGAMSLDDWG YGVPSARPSR
401: SDWRYRPY

Best Arabidopsis Sequence Match ( AT4G36960.2 )
(BLAST)

001: MERKLVVLGI PWDIDSDGLK DYMSKFGDLE DCIVMKDRST GRSRGFGYVT FASAEDAKNA LKGEHFLGNR ILEVKVATPK EEMRQPAKKV TRIFVARIPS
101: SVSESDFRSH FERYGEITDL YMPKDYNSKQ HRGIGFITFS SADSVEDLME DTHDLGGTTV AVDRATPKED DHPPRPPPVA RMSRPPVAIA GGFGAPGGYG
201: AYDAYISAAT RYAALGAPTL YDNPATFYGR GEPTTRGIGN KIFVGRLPQE ASVDDLRDYF GRFGHIQDAY IPKDPKRSGH RGFGFVTFAE NGVADRVARR
301: SHEICGQEVA IDSATPLDEA GPSAGASSML SSSRPEYFGG YGGPMRAFGR MYGGMSLDDW GYGMPNARPS RPDRRYRPY

Arabidopsis Description

AT4g36960/C7A10_400 [Source:UniProtKB/TrEMBL;Acc:Q94AC3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.